RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TSTD1Q8NFU3 115 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ARRDC3Q96B67 414 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 SGSM3Q96HU1 749 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 MRGPRX1Q96LB2 322 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 APOL2Q9BQE5 337 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 MKRN2Q9H000 416 aaKnown RBP16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 PPCSQ9HAB8 311 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ZFYVE1Q9HBF4 777 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ARFGAP3Q9NP61 516 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ZC3H7BQ9UGR2 993 aaKnown RBP16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 TCRBV21S2A2A0A5A6 115 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 STK25O00506 426 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 APBB3O95704 486 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 COL9A1P20849 921 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 OXTRP30559 389 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 HNF1BP35680 557 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 P2RY2P41231 377 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 ELK3P41970 407 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 PMS2P54278 862 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 CREB5Q02930 508 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 NAB1Q13506 487 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 POU6F1Q14863 301 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 TMEM52BQ4KMG9 183 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 MSS51Q4VC12 460 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 KIAA0930Q6ICG6 404 aaPredicted RBP16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 CASC4Q6P4E1 433 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 TMEM92Q6UXU6 159 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 CYP2U1Q7Z449 544 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 RASSF3Q86WH2 238 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 ZSWIM9Q86XI8 627 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 FBXO36Q8NEA4 188 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 GSDMBQ8TAX9 411 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 BLOC1S5Q8TDH9 187 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 OMDQ99983 421 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 HINFPQ9BQA5 517 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 SGK2Q9HBY8 427 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 PREBQ9HCU5 417 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 PCDH12Q9NPG4 1184 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 ZDHHC4Q9NPG8 344 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 SYBUQ9NX95 663 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 EBF1Q9UH73 591 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 PKP3Q9Y446 797 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 MTF2Q9Y483 593 aaPredicted RBP16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 MAD1L1Q9Y6D9 718 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 TRPM6Q9BX84 2022 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 PLXNA2O75051 1894 aa16.05■□□□□ 0.16
PRPF40A-212ENST00000545856 LRRK1Q38SD2 2015 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 C1orf232A0A0U1RR37 186 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 DYNC1I1O14576 645 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 MID1O15344 667 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 LDB2O43679 373 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 AVILO75366 819 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 NDUFV2P19404 249 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 STX2P32856 288 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 DRD3P35462 400 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 NUDT1P36639 197 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 DCDC1P59894 354 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 CNTN1Q12860 1018 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 NAA30Q147X3 362 aaPredicted RBP16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 AGERQ15109 404 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 MAP7D1Q3KQU3 841 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 CERCAMQ5T4B2 595 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 TSTD2Q5T7W7 516 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 PIP5KL1Q5T9C9 394 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 AGBL4Q5VU57 503 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 CWF19L1Q69YN2 538 aaKnown RBP16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 KIAA1161Q6NSJ0 714 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 ZNF765Q7L2R6 523 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 KDELC2Q7Z4H8 507 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 NLRP8Q86W28 1048 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 PALM2Q8IXS6 379 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 NRSN1Q8IZ57 195 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 TTC30BQ8N4P2 665 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 PLEKHG4BQ96PX9 1271 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 GPR63Q9BZJ6 419 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 PCED1AQ9H1Q7 454 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 CDC42EP4Q9H3Q1 356 aaKnown RBP16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 TREX1Q9NSU2 369 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 NLE1Q9NVX2 485 aaPredicted RBP16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 FBXL12Q9NXK8 326 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 PKD2L2Q9NZM6 624 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 DLGAP2Q9P1A6 1054 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 USP36Q9P275 1121 aaKnown RBP16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 B4GALT6Q9UBX8 382 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 FETUBQ9UGM5 382 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 APPL1Q9UKG1 709 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 CHMP2BQ9UQN3 213 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 RPS6KL1Q9Y6S9 549 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 FAM169AQ9Y6X4 670 aa16.04■□□□□ 0.16
PRPF40A-212ENST00000545856 TMEM221A6NGB7 291 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 M0R296 226 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 STX7O15400 261 aaKnown RBP16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 PLRG1O43660 514 aaKnown RBP16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 PYGLP06737 847 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 GABRG2P18507 467 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 CXCL12P48061 93 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 ZNF140P52738 457 aaPredicted RBP16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 OLIG2Q13516 323 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 GAS6Q14393 721 aa16.03■□□□□ 0.16
PRPF40A-212ENST00000545856 CRYMQ14894 314 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms