RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 ALFQ53S48 1182 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 TIGD7Q6NT04 549 aaPredicted RBP15.85■□□□□ 0.13
LDLR-204ENST00000545707 CXCL17Q6UXB2 119 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 LARP4Q71RC2 724 aaKnown RBP eCLIP15.85■□□□□ 0.133e-8■■□□□ 12.3
LDLR-204ENST00000545707 DIS3LQ8TF46 1054 aaKnown RBP15.85■□□□□ 0.13
LDLR-204ENST00000545707 PSMG2Q969U7 264 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 ZFRQ96KR1 1074 aaKnown RBP15.85■□□□□ 0.13
LDLR-204ENST00000545707 PHF12Q96QT6 1004 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 KCNA7Q96RP8 456 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 TMEM79Q9BSE2 394 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 AKTIPQ9H8T0 292 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 PTTG2Q9NZH5 202 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 EGFL7Q9UHF1 273 aa15.85■□□□□ 0.13
LDLR-204ENST00000545707 CNOT6Q9ULM6 557 aaKnown RBP15.85■□□□□ 0.13
LDLR-204ENST00000545707 NR5A2O00482 541 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 S1PR4O95977 384 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 MMP2P08253 660 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 PRSS56P0CW18 603 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 CHRM3P20309 590 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 IMPDH1P20839 514 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 GPR15P49685 360 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 MLLT6P55198 1093 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 KIF19Q2TAC6 998 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 VPS26BQ4G0F5 336 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 ZNF678Q5SXM1 525 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 AFMIDQ63HM1 303 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 GDF6Q6KF10 455 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 KIAA0408Q6ZU52 694 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 CIR1Q86X95 450 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 CCDC117Q8IWD4 279 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 GPR152Q8TDT2 470 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 IMP4Q96G21 291 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 FAR2Q96K12 515 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 ZNF597Q96LX8 424 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 TBATAQ96M53 351 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 NSUN5Q96P11 429 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 RANBP9Q96S59 729 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 PARK7Q99497 189 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 SMOC2Q9H3U7 446 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 TMEM181Q9P2C4 612 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 SARDHQ9UL12 918 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 SLC45A1Q9Y2W3 748 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 HEMK1Q9Y5R4 338 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 ZNF236Q9UL36 1845 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 NYNRINQ9P2P1 1898 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 FAM149AA5PLN7 773 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 KLHL33A6NCF5 533 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 TPST1O60507 370 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 SRP72O76094 671 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 ATP6V1B2P21281 511 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 CD52P31358 61 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 RPL9P32969 192 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 PSMD8P48556 350 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 HSPA13P48723 471 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 CDH15P55291 814 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 PRAMEP78395 509 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 CAPRIN1Q14444 709 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 GRB7Q14451 532 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 MAPRE2Q15555 327 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 PSMD5Q16401 504 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 GEN1Q17RS7 908 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 SIRPB2Q5JXA9 342 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 MORN1Q5T089 497 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 SPATA2LQ8IUW3 424 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 AFAP1L2Q8N4X5 818 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 B4GALNT2Q8NHY0 566 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 EZH1Q92800 747 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 CCDC126Q96EE4 140 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 C19orf60Q96EN9 201 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 RPL10LQ96L21 214 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 SLC25A23Q9BV35 468 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 LIN28AQ9H9Z2 209 aaKnown RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 HSFX1Q9UBD0 423 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 UXTQ9UBK9 157 aaPredicted RBP15.84■□□□□ 0.13
LDLR-204ENST00000545707 TRPV2Q9Y5S1 764 aa15.84■□□□□ 0.13
LDLR-204ENST00000545707 TCRBV3S1A0A5B6 114 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 SAC3D1A6NKF1 404 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 SOCS2O14508 198 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 TNFRSF10BO14763 440 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 AKAP10O43572 662 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 TBX18O95935 607 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 SLC5A2P31639 672 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 MARC1Q5VT66 337 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 DHFR2Q86XF0 187 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 TSPAN14Q8NG11 270 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 CALML6Q8TD86 181 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 CCT7Q99832 543 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 RGS18Q9NS28 235 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 ABI2Q9NYB9 513 aaPredicted RBP15.83■□□□□ 0.12
LDLR-204ENST00000545707 GIT1Q9Y2X7 761 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 DNAJC15Q9Y5T4 150 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 A0A1B0GTL3 188 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 UBXN8O00124 270 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 GPX3P22352 226 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 SLC7A1P30825 629 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 DDR2Q16832 855 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 PFKFB4Q16877 469 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 UGT3A2Q3SY77 523 aa15.83■□□□□ 0.12
LDLR-204ENST00000545707 TAF2Q6P1X5 1199 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms