RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 MYRFLQ96LU7 910 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 SEPT5Q99719 369 aaPredicted RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 FAM118BQ9BPY3 351 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 SLC6A17Q9H1V8 727 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 SSU72Q9NP77 194 aaKnown RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 TDP1Q9NUW8 608 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 DUS2Q9NX74 493 aaKnown RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 KLHL8Q9P2G9 620 aaPredicted RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 PSMC3IPQ9P2W1 217 aaPredicted RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 SAE1Q9UBE0 346 aaPredicted RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 FTSJ1Q9UET6 329 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 ZMYM5Q9UJ78 669 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 NOVA2Q9UNW9 492 aaKnown RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 PCDHB1Q9Y5F3 818 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 SNX11Q9Y5W9 270 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 ZFC3H1O60293 1989 aaKnown RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 TP53BP1Q12888 1972 aaPredicted RBP8.47□□□□□ -1.05
CHD4-208ENST00000540960 DNHD1Q96M86 4753 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 MTORP42345 2549 aa8.47□□□□□ -1.05
CHD4-208ENST00000540960 A0A1W2PQH9 124 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 TYW5A2RUC4 315 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 TP73O15350 636 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 EFSO43281 561 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 PAGE1O75459 146 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 RFPL3O75679 317 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 LRIG2O94898 1065 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 MPOP05164 745 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 ZDHHC11BP0C7U3 371 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 ZSCAN5DPP0CG00 497 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 TFE3P19532 575 aaPredicted RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 CES1P23141 567 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 GLDCP23378 1020 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 GARSP41250 739 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 GRK6P43250 576 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 IFNAR2P48551 515 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 NPY2RP49146 381 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 CSNK1EP49674 416 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 RENBPP51606 427 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 CACNA2D1P54289 1103 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 OXCT1P55809 520 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 MAGOHP61326 146 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 TAF10Q12962 218 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 FRG1Q14331 258 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 SUZ12Q15022 739 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 SEPT7Q16181 437 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 CCDC142Q17RM4 750 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 KIF19Q2TAC6 998 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 BBS9Q3SYG4 887 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 PARP15Q460N3 678 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 TTMPQ5BVD1 217 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 RABGAP1LQ5R372 815 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 C10orf120Q5SQS8 335 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 HECTD3Q5T447 861 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 SYCP2LQ5T4T6 812 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 OTUD1Q5VV17 481 aaPredicted RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 TXNDC8Q6A555 127 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 NAPEPLDQ6IQ20 393 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 LRRC8BQ6P9F7 803 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 C3orf62Q6ZUJ4 267 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 PID1Q7Z2X4 250 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 SCD5Q86SK9 330 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 RTL3Q8N8U3 475 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 ATAD1Q8NBU5 361 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 SCAMP5Q8TAC9 235 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 PTCD2Q8WV60 388 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 OSCP1Q8WVF1 389 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 DNASE2BQ8WZ79 361 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 ARL8AQ96BM9 186 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 P2RY11Q96G91 374 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 SLC39A13Q96H72 371 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 SGSM3Q96HU1 749 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 FCRL2Q96LA5 508 aaPredicted RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 ZNF578Q96N58 590 aaPredicted RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 ZYG11BQ9C0D3 744 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 NSRP1Q9H0G5 558 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 ACSS3Q9H6R3 686 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 LRRC40Q9H9A6 602 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.46□□□□□ -1.062e-7■□□□□ 8.2
CHD4-208ENST00000540960 NSMCE4AQ9NXX6 385 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 BFARQ9NZS9 450 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 SAMD15Q9P1V8 674 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 ZC3H7BQ9UGR2 993 aaKnown RBP8.46□□□□□ -1.06
CHD4-208ENST00000540960 ZNF510Q9Y2H8 683 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 PCDHGA1Q9Y5H4 931 aa8.46□□□□□ -1.06
CHD4-208ENST00000540960 MATN3O15232 486 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 BCAT2O15382 392 aaPredicted RBP8.45□□□□□ -1.06
CHD4-208ENST00000540960 NDUFS2O75306 463 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 SUN1O94901 812 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 INHBAP08476 426 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 RNF224P0DH78 156 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 ETS1P14921 441 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 CHKAP35790 457 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 AVPR1AP37288 418 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 HADHAP40939 763 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 WASP42768 502 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 ACADVLP49748 655 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 IRAK1P51617 712 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 GEMP55040 296 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 GDF10P55107 478 aa8.45□□□□□ -1.06
CHD4-208ENST00000540960 IFI35P80217 286 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms