RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	TEAD1	P28347	426 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SKOR1	P84550	965 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PAFAH1B3	Q15102	231 aa	Known RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CCDC122	Q5T0U0	273 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MARC1	Q5VT66	337 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ALG1L	Q6GMV1	187 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PNCK	Q6P2M8	343 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	NYAP1	Q6ZVC0	841 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	HID1	Q8IV36	788 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ARL10	Q8N8L6	244 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	GPR156	Q8NFN8	814 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	CPLX3	Q8WVH0	158 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SCG3	Q8WXD2	468 aa	Known RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MAML1	Q92585	1016 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	SCRN2	Q96FV2	425 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PRR11	Q96HE9	360 aa	Predicted RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TSGA13	Q96PP4	275 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	MCCC1	Q96RQ3	725 aa	Predicted RBP	13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	POLR1B	Q9H9Y6	1135 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ASCL3	Q9NQ33	180 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	IFNK	Q9P0W0	207 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	UVRAG	Q9P2Y5	699 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PADI4	Q9UM07	663 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PCDHGC4	Q9Y5F7	938 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	PCDHGA8	Q9Y5G5	932 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	ENTPD2	Q9Y5L3	495 aa		13.15	□□□□□ -0.3
SEMA4D-223	ENST00000540475	TTC24	A2A3L6	582 aa	Predicted RBP	13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PSMD11	O00231	422 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RRP8	O43159	456 aa	Known RBP	13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	USP12	O75317	370 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PROSC	O94903	275 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	HEXIM1	O94992	359 aa	Known RBP	13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PGLS	O95336	258 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TNF	P01375	233 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CD48	P09326	243 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CTSE	P14091	401 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PNLIP	P16233	465 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KEL	P23276	732 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ITPKB	P27987	946 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CASP14	P31944	242 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	VIPR1	P32241	457 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ABCG1	P45844	678 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PDX1	P52945	283 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GALNT2	Q10471	571 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TRAF2	Q12933	501 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DPYSL3	Q14195	570 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF235	Q14590	738 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CNGA3	Q16281	694 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SLC18A3	Q16572	532 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZSCAN23	Q3MJ62	389 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KCTD16	Q68DU8	428 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RBM44	Q6ZP01	1051 aa	Known RBP	13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NLRP8	Q86W28	1048 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GKN2	Q86XP6	184 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PELI3	Q8N2H9	469 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	BBS5	Q8N3I7	341 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ATPAF2	Q8N5M1	289 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	OR6C4	Q8NGE1	309 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	OR56A4	Q8NGH8	313 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	OR1E3	Q8WZA6	343 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	FAF2	Q96CS3	445 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	TEX101	Q9BY14	249 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	B4GALT6	Q9UBX8	382 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	KL	Q9UEF7	1012 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	AMACR	Q9UHK6	382 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LCMT1	Q9UIC8	334 aa		13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.14	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CACNB4	O00305	520 aa	Predicted RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MPO	P05164	745 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PCCB	P05166	539 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CES1	P23141	567 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NFKBIA	P25963	317 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GARS	P41250	739 aa	Known RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MLLT3	P42568	568 aa	Predicted RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MMP13	P45452	471 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	GABRE	P78334	506 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DPT	Q07507	201 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	MMRN1	Q13201	1228 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	IHH	Q14623	411 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PDK2	Q15119	407 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	HADH	Q16836	314 aa	Known RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	NCBP2-AS2	Q69YL0	99 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LRRC69	Q6ZNQ3	347 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	RAVER1	Q8IY67	606 aa	Known RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF248	Q8NDW4	579 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PCDH19	Q8TAB3	1148 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PIH1D2	Q8WWB5	315 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DTD2	Q96FN9	168 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	PDXP	Q96GD0	296 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CRELD1	Q96HD1	420 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	SLC46A1	Q96NT5	459 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DCBLD2	Q96PD2	775 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	BBC3	Q96PG8	261 aa	Predicted RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	DNAJC7	Q99615	494 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	CCDC3	Q9BQI4	270 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	ZNF670	Q9BS34	389 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	LGR4	Q9BXB1	951 aa		13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	XPO4	Q9C0E2	1151 aa	Known RBP	13.13	□□□□□ -0.31
SEMA4D-223	ENST00000540475	FGF22	Q9HCT0	170 aa		13.13	□□□□□ -0.31

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