RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TBC1D3DA0A087WVF3 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3IA0A087WXS9 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3EA0A087X179 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3KA0A087X1G2 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3FA6NER0 549 aaPredicted RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 IGLON5A6NGN9 336 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3LB9A6J9 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 BHMG1C9JSJ3 638 aaPredicted RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 NEBLO76041 1014 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 SUN1O94901 812 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 HEXIM1O94992 359 aaKnown RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 AP2A1O95782 977 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 NDST3O95803 873 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 GAS8O95995 478 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 EPOP01588 193 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 KRT14P02533 472 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 C1SP09871 688 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3HP0C7X1 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 MAT2AP31153 395 aaKnown RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 GRIA4P48058 902 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 LIG3P49916 1009 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 CCR5P51681 352 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 GUCY2DQ02846 1103 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 CREB5Q02930 508 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 PTSQ03393 145 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3GQ6DHY5 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3CQ6IPX1 549 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 SLC36A4Q6YBV0 504 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 HORMAD1Q86X24 394 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 JAMLQ86YT9 394 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TBC1D3Q8IZP1 549 aaPredicted RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 AGGF1Q8N302 714 aaeCLIP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 SLC25A41Q8N5S1 370 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 SPACA7Q96KW9 195 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 COQ10AQ96MF6 247 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TRIM51Q9BSJ1 452 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 C1QTNF2Q9BXJ5 285 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 ARNT2Q9HBZ2 717 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 FZD3Q9NPG1 666 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 DYRK4Q9NR20 520 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 RAB6BQ9NRW1 208 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 FAM114A2Q9NRY5 505 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 PIH1D1Q9NWS0 290 aaKnown RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 PAK5Q9P286 719 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 ATXN2Q99700 1313 aaKnown RBP13.03□□□□□ -0.32
CCDC42-202ENST00000539522 TMEM131Q92545 1883 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 PLXNB3Q9ULL4 1909 aa13.03□□□□□ -0.32
CCDC42-202ENST00000539522 ZNF292O60281 2723 aa13.02□□□□□ -0.32
CCDC42-202ENST00000539522 PROB1E7EW31 1015 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TSPAN6O43657 245 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 ERLIN1O75477 346 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 STK10O94804 968 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TMEM63AO94886 807 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 FSBPO95073 299 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 CLDN7O95471 211 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 WNT1P04628 370 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 C6P13671 934 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TGM1P22735 817 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TNFRSF8P28908 595 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 VIPR1P32241 457 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 MAGEA6P43360 314 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 VPS41P49754 854 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 SUOXP51687 545 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 GEMP55040 296 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 RPL26P61254 145 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 FAM193AP78312 1265 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 BNC1Q01954 994 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 CUL1Q13616 776 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 PTK6Q13882 451 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 KCNJ11Q14654 390 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 PPP1R7Q15435 360 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 SPDYCQ5MJ68 293 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 LRRC66Q68CR7 880 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 DUPD1Q68J44 220 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 PRR23BQ6ZRT6 265 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 LPCAT2Q7L5N7 544 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 GSTA5Q7RTV2 222 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 LYSMD3Q7Z3D4 306 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TECPR1Q7Z6L1 1165 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TTC30BQ8N4P2 665 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TP53I13Q8NBR0 393 aaPredicted RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 TMEM145Q8NBT3 493 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 CCHCR1Q8TD31 782 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 HNRNPLLQ8WVV9 542 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 SEC14L1Q92503 715 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 CPT1BQ92523 772 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 ANKRD7Q92527 254 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 PCED1AQ9H1Q7 454 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 MBNL1Q9NR56 388 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 HAUS2Q9NVX0 235 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 EIF2B4Q9UI10 523 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 PILRBQ9UKJ0 227 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 RPL26L1Q9UNX3 145 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 SMG5Q9UPR3 1016 aaKnown RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 ARIH1Q9Y4X5 557 aaPredicted RBP13.02□□□□□ -0.33
CCDC42-202ENST00000539522 SDK1Q7Z5N4 2213 aa13.02□□□□□ -0.33
CCDC42-202ENST00000539522 LRP4O75096 1905 aa13.01□□□□□ -0.33
CCDC42-202ENST00000539522 A0A1W2PPC4 97 aa13.01□□□□□ -0.33
CCDC42-202ENST00000539522 A0A1W2PQ67 120 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms