RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 FOXJ1Q92949 421 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 BMFQ96LC9 184 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 C16orf45Q96MC5 204 aaPredicted RBP13.13□□□□□ -0.31
CHFR-216ENST00000538235 VAT1Q99536 393 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 FICDQ9BVA6 458 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 IL21RQ9HBE5 538 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 GPR27Q9NS67 375 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 RAB23Q9ULC3 237 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 PCDHGA5Q9Y5G8 931 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 CABIN1Q9Y6J0 2220 aa13.13□□□□□ -0.31
CHFR-216ENST00000538235 MTSS1O43312 755 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 OPHN1O60890 802 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SOD1P00441 154 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 ITGAVP06756 1048 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 ZNF806P0C7X5 589 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 GRIA1P42261 906 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 CDK18Q07002 472 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 GRIK2Q13002 908 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SHBQ15464 509 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 TRIM61Q5EBN2 209 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SIRPB2Q5JXA9 342 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 NAPEPLDQ6IQ20 393 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 KIAA1161Q6NSJ0 714 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 NEK5Q6P3R8 708 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SLC23A3Q6PIS1 610 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 PRR23CQ6ZRP0 262 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 TTC30BQ8N4P2 665 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 OR13H1Q8NG92 308 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 PTCD2Q8WV60 388 aaKnown RBP13.12□□□□□ -0.31
CHFR-216ENST00000538235 CENPTQ96BT3 561 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SCRN2Q96FV2 425 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 FEM1CQ96JP0 617 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SERAC1Q96JX3 654 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 LYSMD1Q96S90 227 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 AGAP2Q99490 1192 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 SLC17A9Q9BYT1 436 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 PIH1D1Q9NWS0 290 aaKnown RBP13.12□□□□□ -0.31
CHFR-216ENST00000538235 FAM153AQ9UHL3 310 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 GMEB2Q9UKD1 530 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 TRHDEQ9UKU6 1024 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 PHTF1Q9UMS5 762 aa13.12□□□□□ -0.31
CHFR-216ENST00000538235 TCRBV7S3A2A0A539 114 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ANKRD66B4E2M5 251 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 CES2O00748 559 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 CDX4O14627 284 aaPredicted RBP13.11□□□□□ -0.31
CHFR-216ENST00000538235 BCAT2O15382 392 aaPredicted RBP13.11□□□□□ -0.31
CHFR-216ENST00000538235 NEBLO76041 1014 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 RECQL5O94762 991 aaPredicted RBP13.11□□□□□ -0.31
CHFR-216ENST00000538235 CLDN7O95471 211 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 NDST3O95803 873 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 CFIP05156 583 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ETV3P41162 512 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 GRIA4P48058 902 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 STC1P52823 247 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 RPS21P63220 83 aaKnown RBP13.11□□□□□ -0.31
CHFR-216ENST00000538235 PTSQ03393 145 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ELP6Q0PNE2 266 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 PTPRCAPQ14761 206 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 TRIP13Q15645 432 aaPredicted RBP13.11□□□□□ -0.31
CHFR-216ENST00000538235 CSRP2Q16527 193 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 KIF19Q2TAC6 998 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 P3H1Q32P28 736 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 PRAMEF14Q5SWL7 426 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 CFAP58Q5T655 872 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 Q6ZVL8 140 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ZNF534Q76KX8 674 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 TECPR1Q7Z6L1 1165 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ABI3BPQ7Z7G0 1075 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 SLC25A41Q8N5S1 370 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 FAM122AQ96E09 287 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 DDX47Q9H0S4 455 aaKnown RBP13.11□□□□□ -0.31
CHFR-216ENST00000538235 CD84Q9UIB8 345 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ZNF148Q9UQR1 794 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 ZNF711Q9Y462 761 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 SNX11Q9Y5W9 270 aa13.11□□□□□ -0.31
CHFR-216ENST00000538235 COL27A1Q8IZC6 1860 aaPredicted RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 PTPRZ1P23471 2315 aaPredicted RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 A0A1B0GTW7 788 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 CTAGE9A4FU28 777 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 CFAP69A5D8W1 941 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 NEMP1O14524 444 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 GPR39O43194 453 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 PHF2O75151 1096 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 IFNB1P01574 187 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 ELFN1P0C7U0 828 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 ENGP17813 658 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 TCP1P17987 556 aaKnown RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 HNRNPA2B1P22626 353 aaKnown RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 CES1P23141 567 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 COILP38432 576 aaPredicted RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 PTGIRP43119 386 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 CTSKP43235 329 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 MRPS25P82663 173 aaKnown RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 MPP3Q13368 585 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 AGERQ15109 404 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 SLC1A5Q15758 541 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 SETMARQ53H47 684 aaPredicted RBP13.1□□□□□ -0.31
CHFR-216ENST00000538235 WDR45BQ5MNZ6 344 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 DENND2CQ68D51 928 aa13.1□□□□□ -0.31
CHFR-216ENST00000538235 RANBP10Q6VN20 620 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms