RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 ARHGAP42A6NI28 874 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 SYNCRIPO60506 623 aaKnown RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 UGT1A9O60656 530 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 USP12O75317 370 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 CNTN5O94779 1100 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 ZWINTO95229 277 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 DLDP09622 509 aaKnown RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 PGAM1P18669 254 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 POLR2EP19388 210 aaKnown RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 MZF1P28698 734 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 FOXN2P32314 431 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 OLIG2Q13516 323 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 STARD3Q14849 445 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 C6orf89Q6UWU4 347 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 CYS1Q717R9 158 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 TMPRSS6Q8IU80 811 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 OR52K1Q8NGK4 314 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 MYO19Q96H55 970 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 OXNAD1Q96HP4 312 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 SERAC1Q96JX3 654 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 RPL10LQ96L21 214 aaKnown RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 NAT9Q9BTE0 207 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 MLPHQ9BV36 600 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 SLC39A8Q9C0K1 460 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 TMEM245Q9H330 911 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 UGT1A7Q9HAW7 530 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 UGT1A10Q9HAW8 530 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 UGT1A8Q9HAW9 530 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 NDFIP2Q9NV92 336 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 MOCS1Q9NZB8 636 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 TRIM49D1C9J1S8 452 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 ANKRD65E5RJM6 399 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 MAP3K13O43283 966 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 TIMM44O43615 452 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 KRT37O76014 449 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 EPN2O95208 641 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 CCNB1P14635 433 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 DHPSP49366 369 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 COPAP53621 1224 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 IFT88Q13099 833 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 CRYMQ14894 314 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 ALFQ53S48 1182 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 PITRM1Q5JRX3 1037 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 LGSNQ5TDP6 509 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 HHATQ5VTY9 493 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 ICE2Q659A1 982 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 CXorf57Q6NSI4 855 aaKnown RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 CCDC197Q8NCU1 140 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 WFIKKN2Q8TEU8 576 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 ELAC2Q9BQ52 826 aaKnown RBP12.03□□□□□ -0.48
CLIP1-208ENST00000537004 SLCO3A1Q9UIG8 710 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 GRID1Q9ULK0 1009 aa12.03□□□□□ -0.48
CLIP1-208ENST00000537004 NCOR2Q9Y618 2525 aa12.02□□□□□ -0.48
CLIP1-208ENST00000537004 IGHV1OR15-9A0A0B4J2B8 117 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 WASH4PA8MWX3 477 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 TM9SF1O15321 606 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 MAFKO60675 156 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 KIAA0754O94854 1291 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 ATP5BP06576 529 aaKnown RBP12.02□□□□□ -0.49
CLIP1-208ENST00000537004 SNRPAP09012 282 aaKnown RBP12.02□□□□□ -0.49
CLIP1-208ENST00000537004 TAC1P20366 129 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 MPLP40238 635 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 STK19P49842 368 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-208ENST00000537004 ZKSCAN8Q15776 578 aaPredicted RBP12.02□□□□□ -0.49
CLIP1-208ENST00000537004 PLEKHG6Q3KR16 790 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 AFMIDQ63HM1 303 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 LVRNQ6Q4G3 990 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 SH2D5Q6ZV89 423 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 ZNF683Q8IZ20 524 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 UNC5BQ8IZJ1 945 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 CNTD1Q8N815 330 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 ANKS4BQ8N8V4 417 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 TCP10LQ8TDR4 215 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 TTC17Q96AE7 1141 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 APOPT1Q96IL0 206 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 SPACA7Q96KW9 195 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 MRGPRX3Q96LB0 322 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 CASS4Q9NQ75 786 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 TMEM74BQ9NUR3 256 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 ANKRD36A6QL64 1941 aa12.02□□□□□ -0.49
CLIP1-208ENST00000537004 CACNA1AO00555 2505 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 A0A1B0GVM2 712 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 TCAF2A6NFQ2 919 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PATE3B3GLJ2 98 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 MATN3O15232 486 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 KRT38O76015 456 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 RHOBTB1O94844 696 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 POLBP06746 335 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PYGBP11216 843 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 ADRA1DP25100 572 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 RPL6Q02878 288 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 SLC18A2Q05940 514 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 SF3A3Q12874 501 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PRPSAP1Q14558 356 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 SEPT7Q16181 437 aaKnown RBP12.01□□□□□ -0.49
CLIP1-208ENST00000537004 CSRP2Q16527 193 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PDK4Q16654 411 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 RABGAP1LQ5R372 815 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 PRR23CQ6ZRP0 262 aa12.01□□□□□ -0.49
CLIP1-208ENST00000537004 YTHDF3Q7Z739 585 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms