RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 MYL4P12829 197 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 PRKAR2AP13861 404 aaKnown RBP14.04□□□□□ -0.16
LIG1-203ENST00000536218 ARRB2P32121 409 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 PIWIL3Q7Z3Z3 882 aaKnown RBP14.04□□□□□ -0.16
LIG1-203ENST00000536218 FAM35AQ86V20 835 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 HERC6Q8IVU3 1022 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.04□□□□□ -0.16
LIG1-203ENST00000536218 CLDN25C9JDP6 229 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 SOCS2O14508 198 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 GABRDO14764 452 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 CLOCKO15516 846 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 HSPA4LO95757 839 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 MATN1P21941 496 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 PRKACBP22694 351 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 NCBP2-AS2Q69YL0 99 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 HEATR4Q86WZ0 1026 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 PCDH20Q8N6Y1 951 aaKnown RBP14.04□□□□□ -0.16
LIG1-203ENST00000536218 NPAS2Q99743 824 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 CNOT11Q9UKZ1 510 aaKnown RBP14.04□□□□□ -0.16
LIG1-203ENST00000536218 SNX10Q9Y5X0 201 aa14.04□□□□□ -0.16
LIG1-203ENST00000536218 BCLAF3A2AJT9 711 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 ZSCAN5BA6NJL1 495 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 AURKAO14965 403 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 MFSD11O43934 449 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 KPNA6O60684 536 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 BDNFP23560 247 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 NOS2P35228 1153 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 IST1P53990 364 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 CRADDP78560 199 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 CLCQ05315 142 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 PTK2BQ14289 1009 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 ATAD3BQ5T9A4 648 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 TRMT10BQ6PF06 316 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 STRADAQ7RTN6 431 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 LIMS2Q7Z4I7 341 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 AKAP14Q86UN6 197 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 CDKL3Q8IVW4 592 aaPredicted RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 REM2Q8IYK8 340 aaPredicted RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 ATP6V0D2Q8N8Y2 350 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 TNIP2Q8NFZ5 429 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 RNF139Q8WU17 664 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 SORT1Q99523 831 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 C17orf80Q9BSJ5 609 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 NANOGQ9H9S0 305 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 TCF7L2Q9NQB0 619 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 SMOXQ9NWM0 555 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 WARS2Q9UGM6 360 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 FZD10Q9ULW2 581 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 STAP1Q9ULZ2 295 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 TEX264Q9Y6I9 313 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 RGSL1A5PLK6 1076 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 FAM72CH0Y354 149 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 MSI1O43347 362 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 TPST1O60507 370 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 COPZ1P61923 177 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 MAPRE1Q15691 268 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 FAM72AQ5TYM5 149 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 AGAP7PQ5VUJ5 663 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 OTUD1Q5VV17 481 aaPredicted RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 FAM72DQ6L9T8 149 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 ZNF280DQ6N043 979 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 CASC4Q6P4E1 433 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 CAND1Q86VP6 1230 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 FAM72BQ86X60 149 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 MPP5Q8N3R9 675 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 ZMIZ2Q8NF64 920 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 MAPK15Q8TD08 544 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 HTRA1Q92743 480 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 ZNF486Q96H40 463 aaPredicted RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 FEM1CQ96JP0 617 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 TMEM209Q96SK2 561 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 TDRD1Q9BXT4 1180 aaKnown RBP14.03□□□□□ -0.16
LIG1-203ENST00000536218 POPDC2Q9HBU9 364 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 DDIT4Q9NX09 232 aa14.03□□□□□ -0.16
LIG1-203ENST00000536218 RNF103-CHMP3A0A140T963 221 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 CCRL2O00421 344 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 CHADO15335 359 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 JRKO75564 520 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 SERPINB1P30740 379 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 TTKP33981 857 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 LHX1P48742 406 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 FAM20CQ8IXL6 584 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 ZNF781Q8N8C0 355 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 TERB1Q8NA31 727 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 DEPDC1BQ8WUY9 529 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 FBXL20Q96IG2 436 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 PSD2Q9BQI7 771 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 RAD21L1Q9H4I0 556 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 DUS2Q9NX74 493 aaKnown RBP14.02□□□□□ -0.16
LIG1-203ENST00000536218 SFMBT1Q9UHJ3 866 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 MAGED2Q9UNF1 606 aaPredicted RBP14.02□□□□□ -0.16
LIG1-203ENST00000536218 PCDHGA8Q9Y5G5 932 aa14.02□□□□□ -0.16
LIG1-203ENST00000536218 ILVBLA1L0T0 632 aa14.02□□□□□ -0.17
LIG1-203ENST00000536218 KCNK1O00180 336 aa14.02□□□□□ -0.17
LIG1-203ENST00000536218 RSL1D1O76021 490 aaKnown RBP14.02□□□□□ -0.17
LIG1-203ENST00000536218 VAPBO95292 243 aa14.02□□□□□ -0.17
LIG1-203ENST00000536218 IGHA2P01877 340 aa14.02□□□□□ -0.17
LIG1-203ENST00000536218 ITGB1P05556 798 aa14.02□□□□□ -0.17
LIG1-203ENST00000536218 FYNP06241 537 aa14.02□□□□□ -0.17
LIG1-203ENST00000536218 RALBP11234 206 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms