RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SPATA24Q86W54 205 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 BLOC1S5Q8TDH9 187 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 TBATAQ96M53 351 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 SEMA3CQ99985 751 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 MRGBPQ9NV56 204 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 MTF2Q9Y483 593 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 TRAF6Q9Y4K3 522 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 SLC12A8A0AV02 714 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 BCAS2O75934 225 aaPredicted RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 ATXN1LP0C7T5 689 aaKnown RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 IMPDH1P20839 514 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 POLE2P56282 527 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 IL10RBQ08334 325 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 STX5Q13190 355 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 MAPRE2Q15555 327 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 AGKQ53H12 422 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 CLEC6AQ6EIG7 209 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 FAM45BPQ6NSW5 357 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 FBXL19Q6PCT2 694 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 SLC24A5Q71RS6 500 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 RYBPQ8N488 228 aaPredicted RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 KLHL23Q8NBE8 558 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 KLHDC9Q8NEP7 349 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 FAM45AQ8TCE6 357 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 SH3RF2Q8TEC5 729 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 EXT2Q93063 718 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 GSTO2Q9H4Y5 243 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.19□□□□□ -0.3
LDLR-203ENST00000535915 GBF1Q92538 1859 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 ANKRD12Q6UB98 2062 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 LOC285095A0A1B0GVY8 99 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 PSMD12O00232 456 aaPredicted RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 TRIM38O00635 465 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 TRPA1O75762 1119 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 GLP2RO95838 553 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 ACVRL1P37023 503 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 KCNC1P48547 511 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 PSME3P61289 254 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 GALNT1Q10472 559 aaPredicted RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 SERINC3Q13530 473 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 ADGRE1Q14246 886 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 PTPRCAPQ14761 206 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 ISCA2Q86U28 154 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 OR52K2Q8NGK3 314 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 HMGCLL1Q8TB92 370 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 ZFAND2BQ8WV99 257 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 DLG3Q92796 817 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 POLR1EQ9GZS1 481 aaKnown RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 TLR8Q9NR97 1041 aaKnown RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 UTP6Q9NYH9 597 aaKnown RBP13.19□□□□□ -0.3
LDLR-203ENST00000535915 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.19□□□□□ -0.3
LDLR-203ENST00000535915 ARL5AQ9Y689 179 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 ANKRD36A6QL64 1941 aa13.19□□□□□ -0.3
LDLR-203ENST00000535915 TMEM189-UBE2V1I3L0A0 370 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 UBFD1O14562 309 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 MT-CO1P00395 513 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 PRKCZQ05513 592 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 TAF10Q12962 218 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 ZNF235Q14590 738 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 PARP15Q460N3 678 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 LRRC23Q53EV4 343 aaPredicted RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 FAM219BQ5XKK7 198 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 CCSAPQ6IQ19 270 aaPredicted RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 SAPCD2Q86UD0 394 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 TRIM74Q86UV6 250 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 TRIM73Q86UV7 250 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 B3GALT6Q96L58 329 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 KLHL32Q96NJ5 620 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 OLA1Q9NTK5 396 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 CHCHD3Q9NX63 227 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 EPS15L1Q9UBC2 864 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 RIMS3Q9UJD0 308 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 SLC27A5Q9Y2P5 690 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 PCDHGA7Q9Y5G6 932 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 ATP6AP2A0A1C7CYW4 349 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 TTC36A6NLP5 189 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 ACOT8O14734 319 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 CD3EAPO15446 510 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 ATP6AP2O75787 350 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 GOT2P00505 430 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 CKBP12277 381 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 HDCP19113 662 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 PBX3P40426 434 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 SLC26A3P40879 764 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 MAGEA11P43364 429 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 RPL26P61254 145 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 GALNT3Q14435 633 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 ZNF678Q5SXM1 525 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 RASIP1Q5U651 963 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 FAM171A1Q5VUB5 890 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 REP15Q6BDI9 236 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 SNX31Q8N9S9 440 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 PCSK9Q8NBP7 692 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 TADA1Q96BN2 335 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 PTERQ96BW5 349 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 DNAJC1Q96KC8 554 aaKnown RBP13.18□□□□□ -0.3
LDLR-203ENST00000535915 CENPKQ9BS16 269 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 TRMOQ9BU70 441 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 SQORQ9Y6N5 450 aa13.18□□□□□ -0.3
LDLR-203ENST00000535915 DRGXA6NNA5 263 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms