RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ZIC3	O60481	467 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	HNRNPCL1	O60812	293 aa	Known RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	RTN3	O95197	1032 aa	Predicted RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	CCNDBP1	O95273	360 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	PPP1R3D	O95685	299 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	MT-CYB	P00156	380 aa	Predicted RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	IGKV3-20	P01619	116 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	GALT	P07902	379 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	SPARC	P09486	303 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	DDX5	P17844	614 aa	Known RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	RRM1	P23921	792 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	CHM	P24386	653 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	MAN1A1	P33908	653 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	GGT5	P36269	586 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ARL3	P36405	182 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	RARS	P54136	660 aa	Known RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	CASP6	P55212	293 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ARF3	P61204	181 aa	Predicted RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ARF1	P84077	181 aa	Known RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	BNC1	Q01954	994 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ACSM2A	Q08AH3	577 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	TROAP	Q12815	778 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	TRAF3	Q13114	568 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	PDE1C	Q14123	709 aa	Predicted RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	PPP2R5B	Q15173	497 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	BAK1	Q16611	211 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	SOWAHA	Q2M3V2	549 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ZNF718	Q3SXZ3	478 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	AMZ1	Q400G9	498 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ZNF766	Q5HY98	468 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ACAD10	Q6JQN1	1059 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	DLK2	Q6UY11	383 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	CUZD1	Q86UP6	607 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ZCCHC9	Q8N567	271 aa	Known RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	RFLNB	Q8N5W9	214 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	AGBL3	Q8NEM8	1001 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	BEST2	Q8NFU1	509 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	DNASE2B	Q8WZ79	361 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	RRP36	Q96EU6	259 aa	Known RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	H2AFJ	Q9BTM1	129 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	C17orf75	Q9HAS0	396 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	TCF7L2	Q9NQB0	619 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	DIAPH3	Q9NSV4	1193 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	TMEM160	Q9NX00	188 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	GGA3	Q9NZ52	723 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ZNF224	Q9NZL3	707 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	SIX4	Q9UIU6	781 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	KCNG2	Q9UJ96	466 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	FBXO2	Q9UK22	296 aa	Predicted RBP	2.84	□□□□□ -1.95
CD44-238	ENST00000534296	PNMA2	Q9UL42	364 aa		2.84	□□□□□ -1.95
CD44-238	ENST00000534296	ADGRF5	Q8IZF2	1346 aa		2.84	□□□□□ -1.96
CD44-238	ENST00000534296	BCAT2	O15382	392 aa	Predicted RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	HSPA12A	O43301	675 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	MMP2	P08253	660 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	F7	P08709	466 aa	Predicted RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	ETFA	P13804	333 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	COX7A2	P14406	83 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	AMD1	P17707	334 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	TNFAIP3	P21580	790 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	PIGA	P37287	484 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CCR5	P51681	352 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CCR9	P51686	369 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	EIF3B	P55884	814 aa	Known RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	DLG1	Q12959	904 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CTF1	Q16619	201 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	ACCSL	Q4AC99	568 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	R3HCC1L	Q7Z5L2	792 aa	Known RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	NAGS	Q8N159	534 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	PGBD5	Q8N414	524 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	PDILT	Q8N807	584 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	LMNTD1	Q8N9Z9	388 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	POC1A	Q8NBT0	407 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	NFKBID	Q8NI38	313 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	ETNPPL	Q8TBG4	499 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CREB3L4	Q8TEY5	395 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	KLHL29	Q96CT2	875 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	C3orf30	Q96M34	536 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	INPP4A	Q96PE3	977 aa	Predicted RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	MPHOSPH8	Q99549	860 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CLSTN3	Q9BQT9	956 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	TMX4	Q9H1E5	349 aa	Predicted RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	IL25	Q9H293	177 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	TAS2R10	Q9NYW0	307 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	MPP6	Q9NZW5	540 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	ORC3	Q9UBD5	711 aa	Predicted RBP	2.83	□□□□□ -1.96
CD44-238	ENST00000534296	AASS	Q9UDR5	926 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CYP46A1	Q9Y6A2	500 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	ITIH6	Q6UXX5	1313 aa		2.83	□□□□□ -1.96
CD44-238	ENST00000534296	CKAP5	Q14008	2032 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	IGHV4OR15-8	A0A075B7B6	117 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	GOLGA6L9	A6NEM1	432 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	LRRC53	A6NM62	1247 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	SRRM3	A6NNA2	597 aa	Predicted RBP	2.82	□□□□□ -1.96
CD44-238	ENST00000534296	HNRNPCL2	B2RXH8	293 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	ZBED4	O75132	1171 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	RFPL2	O75678	378 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	PMS2P2	O95744	297 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	HEXA	P06865	529 aa		2.82	□□□□□ -1.96
CD44-238	ENST00000534296	HSP90AA1	P07900	732 aa	Known RBP	2.82	□□□□□ -1.96

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