RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 ACTR5Q9H9F9 607 aaPredicted RBP8.34□□□□□ -1.08
NEDD8-207ENST00000533242 VPS37BQ9H9H4 285 aa8.34□□□□□ -1.08
NEDD8-207ENST00000533242 KLC4Q9NSK0 619 aa8.34□□□□□ -1.08
NEDD8-207ENST00000533242 SERGEFQ9UGK8 458 aa8.34□□□□□ -1.08
NEDD8-207ENST00000533242 CLCA2Q9UQC9 943 aa8.34□□□□□ -1.08
NEDD8-207ENST00000533242 CEP83Q9Y592 693 aa8.34□□□□□ -1.08
NEDD8-207ENST00000533242 HELZ2Q9BYK8 2649 aaKnown RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 E5RJQ4 531 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 XPO1O14980 1071 aaKnown RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 MID1O15344 667 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 IRAK2O43187 625 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 ASMTLO95671 621 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 GOT1P17174 413 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 TFE3P19532 575 aaPredicted RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 RPA3P35244 121 aaPredicted RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 UCNP55089 124 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 INSM1Q01101 510 aaPredicted RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 XRCC4Q13426 336 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 SLC1A5Q15758 541 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 CDO1Q16878 200 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 PROX2Q3B8N5 592 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 FAM102AQ5T9C2 384 aaPredicted RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 PIK3R6Q5UE93 754 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 BROXQ5VW32 411 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 NAPEPLDQ6IQ20 393 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 PPP1R2P3Q6NXS1 205 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 MSANTD2Q6P1R3 559 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 SCML4Q8N228 414 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 FITM2Q8N6M3 262 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 FIBINQ8TAL6 211 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 DENND1AQ8TEH3 1009 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 NDRG1Q92597 394 aaKnown RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 MRGPRX3Q96LB0 322 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 MAK16Q9BXY0 300 aaKnown RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 SYNCQ9H7C4 482 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 GPATCH2LQ9NWQ4 482 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 DDX56Q9NY93 547 aaKnown RBP8.33□□□□□ -1.08
NEDD8-207ENST00000533242 SFMBT1Q9UHJ3 866 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 ASXL3Q9C0F0 2248 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 KNL1Q8NG31 2342 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 PTPRQQ9UMZ3 2332 aa8.33□□□□□ -1.08
NEDD8-207ENST00000533242 WNT9AO14904 365 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 MAGEC1O60732 1142 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 RNASEH2AO75792 299 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 TRUB2O95900 331 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SRPRAP08240 638 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SLC8A1P32418 973 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 STX2P32856 288 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 NUDT1P36639 197 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 CETN2P41208 172 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 CSKP41240 450 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 RGS7P49802 495 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 KCNJ2P63252 427 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 BNIP3Q12983 259 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 HIF1AQ16665 826 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 GALNTL6Q49A17 601 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 PKDCCQ504Y2 493 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 TAF1BQ53T94 588 aaPredicted RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 C9orf64Q5T6V5 341 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 BSPRYQ5W0U4 402 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 FAM183BPQ6ZVS7 135 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ZC3H18Q86VM9 953 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ANKS4BQ8N8V4 417 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 MFSD2AQ8NA29 543 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 HJURPQ8NCD3 748 aaPredicted RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ZNF248Q8NDW4 579 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 FNIP1Q8TF40 1166 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 AZIN2Q96A70 460 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SERAC1Q96JX3 654 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 CFAP57Q96MR6 1250 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ZNF578Q96N58 590 aaPredicted RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 PAIP2Q9BPZ3 127 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 CALN1Q9BXU9 219 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 LRRC4Q9HBW1 653 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ABCC13Q9NSE7 274 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 RABGEF1Q9UJ41 708 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 TRIM33Q9UPN9 1127 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SHOC2Q9UQ13 582 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ERVW-1Q9UQF0 538 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 KNTC1P50748 2209 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ASH1LQ9NR48 2969 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 EDDM13A0A1B0GTR0 161 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 C2CD4BA6NLJ0 364 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ACSL4O60488 711 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 AVILO75366 819 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 DNAJC8O75937 253 aaPredicted RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ADH1BP00325 375 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 MT-CO3P00414 261 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 IGLV3-27P01718 113 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 C5AR1P21730 350 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 IL4RP24394 825 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ATP5DP30049 168 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 GABRB2P47870 512 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 SLC11A2P49281 568 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 ADPRHP54922 357 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 GSCP56915 257 aaPredicted RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 PCBP4P57723 403 aaKnown RBP8.32□□□□□ -1.08
NEDD8-207ENST00000533242 TMPRSS3P57727 454 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 NCALDP61601 193 aa8.32□□□□□ -1.08
NEDD8-207ENST00000533242 CA9Q16790 459 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms