RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TMEM196Q5HYL7 178 aa21.28■■□□□ 1
VPS28-212ENST00000530836 LPCAT1Q8NF37 534 aa21.28■■□□□ 1
VPS28-212ENST00000530836 FLCNQ8NFG4 579 aa21.28■■□□□ 1
VPS28-212ENST00000530836 OSBPL6Q9BZF3 934 aa21.28■■□□□ 1
VPS28-212ENST00000530836 FOXQ1Q9C009 403 aa21.28■■□□□ 1
VPS28-212ENST00000530836 KCNK9Q9NPC2 374 aa21.28■■□□□ 1
VPS28-212ENST00000530836 C11orf16Q9NQ32 467 aa21.28■■□□□ 1
VPS28-212ENST00000530836 DEC1Q9P2X7 70 aa21.28■■□□□ 1
VPS28-212ENST00000530836 MTF2Q9Y483 593 aaPredicted RBP21.28■■□□□ 1
VPS28-212ENST00000530836 TMEM120BA0PK00 339 aa21.27■■□□□ 1
VPS28-212ENST00000530836 FAM170BA6NMN3 283 aa21.27■■□□□ 1
VPS28-212ENST00000530836 C2orf81A6NN90 581 aa21.27■■□□□ 1
VPS28-212ENST00000530836 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.27■■□□□ 1
VPS28-212ENST00000530836 TRIM49D1C9J1S8 452 aa21.27■■□□□ 1
VPS28-212ENST00000530836 GPR37L1O60883 481 aa21.27■■□□□ 1
VPS28-212ENST00000530836 DLDP09622 509 aaKnown RBP21.27■■□□□ 1
VPS28-212ENST00000530836 KRT4P19013 534 aa21.27■■□□□ 1
VPS28-212ENST00000530836 HADHAP40939 763 aa21.27■■□□□ 1
VPS28-212ENST00000530836 RECQLP46063 649 aaPredicted RBP21.27■■□□□ 1
VPS28-212ENST00000530836 EPHB1P54762 984 aa21.27■■□□□ 1
VPS28-212ENST00000530836 GRSF1Q12849 480 aaKnown RBP eCLIP21.27■■□□□ 1
VPS28-212ENST00000530836 UBXN2BQ14CS0 331 aa21.27■■□□□ 1
VPS28-212ENST00000530836 DLG2Q15700 870 aa21.27■■□□□ 1
VPS28-212ENST00000530836 GEN1Q17RS7 908 aa21.27■■□□□ 1
VPS28-212ENST00000530836 MYLK3Q32MK0 819 aa21.27■■□□□ 1
VPS28-212ENST00000530836 GRAMD4Q6IC98 578 aa21.27■■□□□ 1
VPS28-212ENST00000530836 KIAA0408Q6ZU52 694 aa21.27■■□□□ 1
VPS28-212ENST00000530836 SUGP1Q8IWZ8 645 aaKnown RBP21.27■■□□□ 1
VPS28-212ENST00000530836 KDM1BQ8NB78 822 aa21.27■■□□□ 1
VPS28-212ENST00000530836 PDCD6IPQ8WUM4 868 aaKnown RBP21.27■■□□□ 1
VPS28-212ENST00000530836 MYO19Q96H55 970 aa21.27■■□□□ 1
VPS28-212ENST00000530836 NKIRAS1Q9NYS0 192 aa21.27■■□□□ 1
VPS28-212ENST00000530836 EVLQ9UI08 416 aaPredicted RBP21.27■■□□□ 1
VPS28-212ENST00000530836 NDRG2Q9UN36 371 aaKnown RBP21.27■■□□□ 1
VPS28-212ENST00000530836 MYOFQ9NZM1 2061 aa21.27■■□□□ 1
VPS28-212ENST00000530836 FAM47DPA6NHR8 397 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 TRAFD1O14545 582 aaPredicted RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 UGT1A9O60656 530 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 SHOX2O60902 331 aaPredicted RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 PDHA1P08559 390 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 TARSP26639 723 aaKnown RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 TMEM215Q68D42 235 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 CWF19L1Q69YN2 538 aaKnown RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 GLT6D1Q7Z4J2 308 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 STRA8Q7Z7C7 330 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 NDUFAF2Q8N183 169 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 RYBPQ8N488 228 aaPredicted RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 ACMSDQ8TDX5 336 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 SGSM3Q96HU1 749 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 ZNF641Q96N77 438 aaPredicted RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 RBBP8Q99708 897 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 C19orf43Q9BQ61 176 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 C1QTNF1Q9BXJ1 281 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 TNKS2Q9H2K2 1166 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 UGT1A7Q9HAW7 530 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 UGT1A10Q9HAW8 530 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 UGT1A8Q9HAW9 530 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 MAGEE1Q9HCI5 957 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 IARS2Q9NSE4 1012 aaKnown RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 HECAQ9UBI9 543 aaPredicted RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 SIT1Q9Y3P8 196 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 PCDHB9Q9Y5E1 797 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 COL4A3Q01955 1670 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 A0A1W2PPM1 405 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 FAM86C2PA6NEL3 165 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 WASH3PC4AMC7 463 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 DRD1P21728 446 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 PSMA3P25788 255 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 ARNTP27540 789 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 CLCN5P51795 746 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 ST8SIA6P61647 398 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 PRAMEP78395 509 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 QPCTQ16769 361 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 FSTL4Q6MZW2 842 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 PHTF2Q8N3S3 785 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 PJA1Q8NG27 643 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 OR13J1Q8NGT2 312 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 PTPRN2Q92932 1015 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 INTS9Q9NV88 658 aaKnown RBP21.26■□□□□ 0.99
VPS28-212ENST00000530836 SLC2A6Q9UGQ3 507 aa21.26■□□□□ 0.99
VPS28-212ENST00000530836 ITGA2BP08514 1039 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 CHN1P15882 459 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 POLD2P49005 469 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 LIMK2P53671 638 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 SLC18A2Q05940 514 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 MESP2Q0VG99 397 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 FZD5Q13467 585 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 NEPROQ6NW34 567 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 GALNT7Q86SF2 657 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 CAMK1DQ8IU85 385 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 AGAP2Q99490 1192 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 CIPCQ9C0C6 399 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 ELOVL2Q9NXB9 296 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 IL1RAPL1Q9NZN1 696 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 SLCO3A1Q9UIG8 710 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 PLA2G4CQ9UP65 541 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 PSAT1Q9Y617 370 aa21.25■□□□□ 0.99
VPS28-212ENST00000530836 CCDC78A2IDD5 438 aa21.24■□□□□ 0.99
VPS28-212ENST00000530836 SRRM3A6NNA2 597 aaPredicted RBP21.24■□□□□ 0.99
VPS28-212ENST00000530836 TRIM24O15164 1050 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms