RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CCNCP24863 283 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 SERPINB6P35237 376 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 TRIM23P36406 574 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 HSPA9P38646 679 aaKnown RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 CDKN2BP42772 138 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 RENBPP51606 427 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 YPEL5P62699 121 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 INSM1Q01101 510 aaPredicted RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 ZNF235Q14590 738 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 IFI16Q16666 785 aaKnown RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 MACC1Q6ZN28 852 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 TECPR1Q7Z6L1 1165 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 DCP2Q8IU60 420 aaKnown RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 LRRC49Q8IUZ0 686 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 RHOT2Q8IXI1 618 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.69□□□□□ -0.7
CD44-227ENST00000528086 FAM181AQ8N9Y4 354 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 OR1E3Q8WZA6 343 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 TADA1Q96BN2 335 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 EID2BQ96D98 161 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 WDR24Q96S15 920 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 CEP41Q9BYV8 373 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 FGF22Q9HCT0 170 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 SCUBE2Q9NQ36 999 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 RBM22Q9NW64 420 aaKnown RBP eCLIP10.69□□□□□ -0.7
CD44-227ENST00000528086 RAI2Q9Y5P3 530 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 URB1O60287 2271 aaKnown RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 ITPR1Q14643 2758 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 BPTFQ12830 3046 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 A0A1W2PNU3 283 aaPredicted RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 RFPL3O75679 317 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 JCHAINP01591 159 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PCCBP05166 539 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 C1SP09871 688 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 CKMT1AP12532 417 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 CCNB1P14635 433 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 TSHRP16473 764 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 VIPR1P32241 457 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 HNF1BP35680 557 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 ETV3P41162 512 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 HNRNPKP61978 463 aaKnown RBP eCLIP10.68□□□□□ -0.7
CD44-227ENST00000528086 IFI35P80217 286 aaPredicted RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 SKOR1P84550 965 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PTSQ03393 145 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 NFATC4Q14934 902 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 TCEA2Q15560 299 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 TSR1Q2NL82 804 aaKnown RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 DEFB133Q30KQ1 61 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 CRTC1Q6UUV9 634 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 Q6ZVL8 140 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 VSIG1Q86XK7 387 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 SLC35F3Q8IY50 421 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PHACTR4Q8IZ21 702 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 TPCN2Q8NHX9 752 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 MDM1Q8TC05 714 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 SCRN2Q96FV2 425 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PDXPQ96GD0 296 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PANX2Q96RD6 677 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 TRIB3Q96RU7 358 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 AGAP2Q99490 1192 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 BOCQ9BWV1 1114 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 TDRD1Q9BXT4 1180 aaKnown RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 MRPL40Q9NQ50 206 aaKnown RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 NLGN3Q9NZ94 848 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PHTF1Q9UMS5 762 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 CHKBQ9Y259 395 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 PCYT1BQ9Y5K3 369 aaPredicted RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 EPN1Q9Y6I3 576 aaPredicted RBP10.68□□□□□ -0.7
CD44-227ENST00000528086 CSNK1G3Q9Y6M4 447 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 ZFYVE26Q68DK2 2539 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 UNC13CQ8NB66 2214 aa10.68□□□□□ -0.7
CD44-227ENST00000528086 LOC400499M0QZD8 3231 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 A0A0A6YYK5 440 aaPredicted RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 A0A0J9YYE9 177 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 TRABD2BA6NFA1 517 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 SRRM3A6NNA2 597 aaPredicted RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 YY2O15391 372 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 AQP9O43315 295 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 LZTS3O60299 673 aaPredicted RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 NDUFA10O95299 355 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 CPP00450 1065 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 TRBC1P01850 177 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 KRT1P04264 644 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 TPM1P09493 284 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 ELFN1P0C7U0 828 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 TNNT1P13805 278 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 XPAP23025 273 aaPredicted RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 CD68P34810 354 aaPredicted RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 SLC1A1P43005 524 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 PEX5P50542 639 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 HK3P52790 923 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 WASHC5Q12768 1159 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 MTM1Q13496 603 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 PRKD1Q15139 912 aaPredicted RBP10.67□□□□□ -0.7
CD44-227ENST00000528086 PRRT3Q5FWE3 981 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 RALGPS1Q5JS13 557 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 PERM1Q5SV97 790 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 HES3Q5TGS1 186 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 CDCP2Q5VXM1 449 aa10.67□□□□□ -0.7
CD44-227ENST00000528086 ERAP2Q6P179 960 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms