RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 B4GALNT1Q00973 533 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 CA9Q16790 459 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 SPECC1LQ69YQ0 1117 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 DPPA4Q7L190 304 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 USP7Q93009 1102 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 SEMA6CQ9H3T2 930 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 DPEP2Q9H4A9 486 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 CYP4F12Q9HCS2 524 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 DONSONQ9NYP3 566 aa23.65■■□□□ 1.38
CPSF1-202ENST00000527827 SPTA1P02549 2419 aa23.64■■□□□ 1.38
CPSF1-202ENST00000527827 TRAFD1O14545 582 aaPredicted RBP23.64■■□□□ 1.37
CPSF1-202ENST00000527827 NUDT21O43809 227 aaKnown RBP23.64■■□□□ 1.37
CPSF1-202ENST00000527827 TPM2P07951 284 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 ITGB6P18564 788 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 WT1P19544 449 aaPredicted RBP23.64■■□□□ 1.37
CPSF1-202ENST00000527827 KELP23276 732 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 COPB1P53618 953 aaKnown RBP23.64■■□□□ 1.37
CPSF1-202ENST00000527827 BCL2L1Q07817 233 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 ARHGEF7Q14155 803 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 DCUN1D2Q6PH85 259 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 VASH2Q86V25 355 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 DTX1Q86Y01 620 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 ARHGAP12Q8IWW6 846 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 MCOLN2Q8IZK6 566 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 NEK11Q8NG66 645 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 CMKLR1Q99788 373 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 FAM117AQ9C073 453 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 STARD5Q9NSY2 213 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 FANCLQ9NW38 375 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 SEPT10Q9P0V9 454 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 AP4E1Q9UPM8 1137 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 PCDHGA4Q9Y5G9 962 aa23.64■■□□□ 1.37
CPSF1-202ENST00000527827 C9orf172C9J069 976 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 EEF2KO00418 725 aaKnown RBP23.63■■□□□ 1.37
CPSF1-202ENST00000527827 MAPK10P53779 464 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 NSUN2Q08J23 767 aaKnown RBP eCLIP23.63■■□□□ 1.37
CPSF1-202ENST00000527827 C16orf72Q14CZ0 275 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 MANEAQ5SRI9 462 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 PNCKQ6P2M8 343 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 ARHGAP36Q6ZRI8 547 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 CINPQ9BW66 212 aaPredicted RBP23.63■■□□□ 1.37
CPSF1-202ENST00000527827 DHX35Q9H5Z1 703 aaKnown RBP23.63■■□□□ 1.37
CPSF1-202ENST00000527827 WDR26Q9H7D7 661 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 SPATS2LQ9NUQ6 558 aaKnown RBP23.63■■□□□ 1.37
CPSF1-202ENST00000527827 MOSPD1Q9UJG1 213 aa23.63■■□□□ 1.37
CPSF1-202ENST00000527827 SDK2Q58EX2 2172 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 PRSS38A1L453 326 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 A8MX80 341 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 B4GAT1O43505 415 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 PHF19Q5T6S3 580 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 ACAD10Q6JQN1 1059 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 C17orf82Q86X59 251 aaPredicted RBP23.62■■□□□ 1.37
CPSF1-202ENST00000527827 ARFGAP1Q8N6T3 406 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 NPWQ8N729 165 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 PCMTD1Q96MG8 357 aaPredicted RBP23.62■■□□□ 1.37
CPSF1-202ENST00000527827 PEBP4Q96S96 227 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 KCTD15Q96SI1 283 aaPredicted RBP23.62■■□□□ 1.37
CPSF1-202ENST00000527827 ARHGAP9Q9BRR9 750 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 CHMP5Q9NZZ3 219 aa23.62■■□□□ 1.37
CPSF1-202ENST00000527827 HEMK1Q9Y5R4 338 aaPredicted RBP23.62■■□□□ 1.37
CPSF1-202ENST00000527827 A0A1W2PQC6 194 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 TEX33O43247 280 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 FUCA1P04066 466 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 FAM87AP0C7U9 286 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 ERCC2P18074 760 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 CSRP3P50461 194 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 MAZP56270 477 aaKnown RBP23.61■■□□□ 1.37
CPSF1-202ENST00000527827 POLR2LP62875 67 aaKnown RBP23.61■■□□□ 1.37
CPSF1-202ENST00000527827 NFKB2Q00653 900 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 ACOX1Q15067 660 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 RFX8Q6ZV50 586 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 NRROSQ86YC3 692 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 GPBAR1Q8TDU6 330 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 COQ10AQ96MF6 247 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 SNRNP25Q9BV90 132 aaKnown RBP23.61■■□□□ 1.37
CPSF1-202ENST00000527827 TRIM4Q9C037 500 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 RDH14Q9HBH5 336 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 TAS2R14Q9NYV8 317 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 B4GALT6Q9UBX8 382 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 NAV2Q8IVL1 2488 aa23.61■■□□□ 1.37
CPSF1-202ENST00000527827 LGALS16A8MUM7 142 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 EIF3CLB5ME19 914 aaKnown RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 DFFAO00273 331 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 TERTO14746 1132 aaKnown RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 ARHGAP6O43182 974 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 MYCLP1P12525 358 aaPredicted RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 CCNB1P14635 433 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 SCNN1BP51168 640 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 OR1D5P58170 312 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 IL10RBQ08334 325 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 MAMLD1Q13495 774 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 RFTN1Q14699 578 aaPredicted RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 TBR1Q16650 682 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 TSR1Q2NL82 804 aaKnown RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 MAP9Q49MG5 647 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 ERMARDQ5T6L9 678 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 ZNF574Q6ZN55 896 aaPredicted RBP23.6■■□□□ 1.37
CPSF1-202ENST00000527827 ZNF438Q7Z4V0 828 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 PIM3Q86V86 326 aa23.6■■□□□ 1.37
CPSF1-202ENST00000527827 PAF1Q8N7H5 531 aa23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms