RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GALK1P51570 392 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 POLR2LP62875 67 aaKnown RBP21.07■□□□□ 0.96
VPS28-208ENST00000527797 PTPRCAPQ14761 206 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 PTPRRQ15256 657 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 UGP2Q16851 508 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 HNRNPA1L2Q32P51 320 aaKnown RBP21.07■□□□□ 0.96
VPS28-208ENST00000527797 ARSIQ5FYB1 569 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 MROH9Q5TGP6 573 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 ZSWIM9Q86XI8 627 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 TTC30BQ8N4P2 665 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 ZNF366Q8N895 744 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 OR4K2Q8NGD2 314 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 HLA-CQ95604 372 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 RBBP8Q99708 897 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 PHF7Q9BWX1 381 aaPredicted RBP21.07■□□□□ 0.96
VPS28-208ENST00000527797 GPR63Q9BZJ6 419 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 KCNK9Q9NPC2 374 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 THAP10Q9P2Z0 257 aaPredicted RBP21.07■□□□□ 0.96
VPS28-208ENST00000527797 LIMD1Q9UGP4 676 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 PPIL1Q9Y3C6 166 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 CAPN8A6NHC0 703 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 CCL22O00626 93 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 STX7O15400 261 aaKnown RBP21.07■□□□□ 0.96
VPS28-208ENST00000527797 LEFTY1O75610 366 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 HNF1BP35680 557 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 DNAJC3Q13217 504 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 ZNF470Q6ECI4 717 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 BRAT1Q6PJG6 821 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 SERPINA13PQ6UXR4 307 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 PTAR1Q7Z6K3 402 aaPredicted RBP21.07■□□□□ 0.96
VPS28-208ENST00000527797 CDKN2AIPNLQ96HQ2 116 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 P2RY13Q9BPV8 354 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 TMEM245Q9H330 911 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 KCNK12Q9HB15 430 aa21.07■□□□□ 0.96
VPS28-208ENST00000527797 COL4A3Q01955 1670 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 HMX2A2RU54 273 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 GOT2P00505 430 aaKnown RBP21.06■□□□□ 0.96
VPS28-208ENST00000527797 ITGA2BP08514 1039 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 KRT4P19013 534 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 CTBP1Q13363 440 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 E2F5Q15329 346 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 GPR153Q6NV75 609 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 TIFABQ6ZNK6 161 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 KIAA0408Q6ZU52 694 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 USP45Q70EL2 814 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 LYSMD3Q7Z3D4 306 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 DENND6AQ8IWF6 608 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 C4orf33Q8N1A6 199 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 OTUD6BQ8N6M0 293 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 C2CD4AQ8NCU7 369 aaPredicted RBP21.06■□□□□ 0.96
VPS28-208ENST00000527797 ALKBH8Q96BT7 664 aaKnown RBP21.06■□□□□ 0.96
VPS28-208ENST00000527797 SCRN2Q96FV2 425 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 SERAC1Q96JX3 654 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 LYSMD1Q96S90 227 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 SSU72Q9NP77 194 aaKnown RBP21.06■□□□□ 0.96
VPS28-208ENST00000527797 TRPV5Q9NQA5 729 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 FBXO5Q9UKT4 447 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 PKP3Q9Y446 797 aa21.06■□□□□ 0.96
VPS28-208ENST00000527797 CCDC162PA2VCL2 907 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 RRP9O43818 475 aaKnown RBP21.05■□□□□ 0.96
VPS28-208ENST00000527797 CTSLP07711 333 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 BMP1P13497 986 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 HLA-EP13747 358 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 HMGCLP35914 325 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 HADHAP40939 763 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 SLC1A2P43004 574 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 LIMK2P53671 638 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 C9orf64Q5T6V5 341 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 SLC44A3Q8N4M1 653 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 HCAR2Q8TDS4 363 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 SUDS3Q9H7L9 328 aaPredicted RBP21.05■□□□□ 0.96
VPS28-208ENST00000527797 ZFYVE1Q9HBF4 777 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 POLR3BQ9NW08 1133 aaPredicted RBP21.05■□□□□ 0.96
VPS28-208ENST00000527797 SUN2Q9UH99 717 aa21.05■□□□□ 0.96
VPS28-208ENST00000527797 SMG5Q9UPR3 1016 aaKnown RBP21.05■□□□□ 0.96
VPS28-208ENST00000527797 C1orf232A0A0U1RR37 186 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 TMEM120BA0PK00 339 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 PRNPP04156 253 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 TNFRSF4P43489 277 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 ZNF805Q5CZA5 627 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 AFTPHQ6ULP2 937 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 TPRG1Q6ZUI0 275 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 STK40Q8N2I9 435 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 OR4L1Q8NH43 312 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 OR8D1Q8WZ84 308 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 KLF6Q99612 283 aaPredicted RBP21.04■□□□□ 0.96
VPS28-208ENST00000527797 MCMBPQ9BTE3 642 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 FBRSL1Q9HCM7 1045 aaKnown RBP21.04■□□□□ 0.96
VPS28-208ENST00000527797 IL17CQ9P0M4 197 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 STARD13Q9Y3M8 1113 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 MYLKQ15746 1914 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 A0A0U1RQS6 177 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 TSPAN11A1L157 253 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 OR51F1A6NGY5 319 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 SPECC1L-ADORA2AF8WAN1 911 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 GOLGA8RI6L899 631 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 SPAG7O75391 227 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 AHSGP02765 367 aa21.04■□□□□ 0.96
VPS28-208ENST00000527797 F7P08709 466 aaPredicted RBP21.04■□□□□ 0.96
VPS28-208ENST00000527797 HNRNPLP14866 589 aaKnown RBP eCLIP21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms