RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PDE2AO00408 941 aaPredicted RBP20.67■□□□□ 0.9
VPS28-206ENST00000526734 FZD6O60353 706 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 PCCBP05166 539 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 IFI35P80217 286 aaPredicted RBP20.67■□□□□ 0.9
VPS28-206ENST00000526734 SLC10A2Q12908 348 aaPredicted RBP20.67■□□□□ 0.9
VPS28-206ENST00000526734 ARHGEF7Q14155 803 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 TFDP2Q14188 446 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 ACOX1Q15067 660 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 CNGA3Q16281 694 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 C11orf63Q6NUN7 778 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 RAVER1Q8IY67 606 aaKnown RBP20.67■□□□□ 0.9
VPS28-206ENST00000526734 NUS1Q96E22 293 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 APOLD1Q96LR9 279 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 WDR92Q96MX6 357 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 KLQ9UEF7 1012 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 KLF15Q9UIH9 416 aa20.67■□□□□ 0.9
VPS28-206ENST00000526734 MAP1BP46821 2468 aaKnown RBP20.67■□□□□ 0.9
VPS28-206ENST00000526734 LMO7DNF2Z398 122 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 MAP3K6O95382 1288 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 ANXA6P08133 673 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 ALPIP09923 528 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 TSHRP16473 764 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 ZNF30P17039 623 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 TEAD1P28347 426 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 TRIM23P36406 574 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 RPIAP49247 311 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 HK3P52790 923 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 SEMG2Q02383 582 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 ELOCQ15369 112 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 PRRT3Q5FWE3 981 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 LVRNQ6Q4G3 990 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 KDM7AQ6ZMT4 941 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 RFX6Q8HWS3 928 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 PIH1D2Q8WWB5 315 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 LRRC61Q9BV99 259 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 TDRD1Q9BXT4 1180 aaKnown RBP20.66■□□□□ 0.9
VPS28-206ENST00000526734 WDR26Q9H7D7 661 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 DKK4Q9UBT3 224 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.66■□□□□ 0.9
VPS28-206ENST00000526734 TTLL3Q9Y4R7 772 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 HEY1Q9Y5J3 304 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 ALG6Q9Y672 507 aa20.66■□□□□ 0.9
VPS28-206ENST00000526734 ARID1BQ8NFD5 2236 aaPredicted RBP20.65■□□□□ 0.9
VPS28-206ENST00000526734 ANKRD36A6QL64 1941 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 TNFRSF10CO14798 259 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 NDUFA10O95299 355 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 HLA-DQB2P05538 268 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 JUPP14923 745 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 NR2C2P49116 596 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 EPHB1P54762 984 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 DSC2Q02487 901 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 TAZQ16635 292 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 ALG11Q2TAA5 492 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 ENPP7Q6UWV6 458 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 RBFAQ8N0V3 343 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 CBARPQ8N350 705 aaPredicted RBP20.65■□□□□ 0.9
VPS28-206ENST00000526734 PDCD7Q8N8D1 485 aaKnown RBP20.65■□□□□ 0.9
VPS28-206ENST00000526734 ARRDC2Q8TBH0 407 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 SCG3Q8WXD2 468 aaKnown RBP20.65■□□□□ 0.9
VPS28-206ENST00000526734 RNF25Q96BH1 459 aaPredicted RBP20.65■□□□□ 0.9
VPS28-206ENST00000526734 DTD2Q96FN9 168 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 OLFM3Q96PB7 478 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 OR1A2Q9Y585 309 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 EPN1Q9Y6I3 576 aaPredicted RBP20.65■□□□□ 0.9
VPS28-206ENST00000526734 DGKBQ9Y6T7 804 aa20.65■□□□□ 0.9
VPS28-206ENST00000526734 NPIPB15A6NHN6 443 aaPredicted RBP20.64■□□□□ 0.89
VPS28-206ENST00000526734 CTSEP14091 401 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 GM2AP17900 193 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 SRP54P61011 504 aaKnown RBP20.64■□□□□ 0.89
VPS28-206ENST00000526734 C6orf132Q5T0Z8 1188 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 HES3Q5TGS1 186 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 PNCKQ6P2M8 343 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 HID1Q8IV36 788 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 KATNAL2Q8IYT4 538 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 PLA2G15Q8NCC3 412 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 OR56A4Q8NGH8 313 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 RBM41Q96IZ5 413 aaKnown RBP20.64■□□□□ 0.89
VPS28-206ENST00000526734 LGMNQ99538 433 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 CCDC86Q9H6F5 360 aaKnown RBP20.64■□□□□ 0.89
VPS28-206ENST00000526734 PHPT1Q9NRX4 125 aaPredicted RBP20.64■□□□□ 0.89
VPS28-206ENST00000526734 ZMIZ1Q9ULJ6 1067 aa20.64■□□□□ 0.89
VPS28-206ENST00000526734 A0A0J9YYE9 177 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 CAPN8A6NHC0 703 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 BTNL10A8MVZ5 291 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 A8MX80 341 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 TNFP01375 233 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 JCHAINP01591 159 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 TRBC1P01850 177 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 PYGLP06737 847 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 TNNT1P13805 278 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 TGM2P21980 687 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 LHCGRP22888 699 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 CDKN2BP42772 138 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 CAMK2BQ13554 666 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 NR0B2Q15466 257 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 SLC14A2Q15849 920 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 DEFB133Q30KQ1 61 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 MFSD7Q6UXD7 560 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 ZNF765Q7L2R6 523 aa20.63■□□□□ 0.89
VPS28-206ENST00000526734 GKN2Q86XP6 184 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms