RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 PEX11BO96011 259 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 HOXC4P09017 264 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-215ENST00000515516 CR2P20023 1033 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 TGM2P21980 687 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 CES1P23141 567 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 EIF2S3P41091 472 aaKnown RBP13.7□□□□□ -0.22
TCOF1-215ENST00000515516 GABREP78334 506 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 DPYSL3Q14195 570 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 TBC1D25Q3MII6 688 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 ANKRD20A8PQ5CZ79 823 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 PNCKQ6P2M8 343 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 CRTC1Q6UUV9 634 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 TAF8Q7Z7C8 310 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 PGBD5Q8N414 524 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 OR6C4Q8NGE1 309 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 PCDH19Q8TAB3 1148 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 SPOCK2Q92563 424 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 FUBP1Q96AE4 644 aaKnown RBP13.7□□□□□ -0.22
TCOF1-215ENST00000515516 NUS1Q96E22 293 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 ZNF578Q96N58 590 aaPredicted RBP13.7□□□□□ -0.22
TCOF1-215ENST00000515516 CCDC3Q9BQI4 270 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 ZNF670Q9BS34 389 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 POLR1EQ9GZS1 481 aaKnown RBP13.7□□□□□ -0.22
TCOF1-215ENST00000515516 TSPY26PQ9H489 355 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 DGKBQ9Y6T7 804 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 PTPRBP23467 1997 aa13.7□□□□□ -0.22
TCOF1-215ENST00000515516 CHD5Q8TDI0 1954 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 SSU72P8A0A1W2PR75 194 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 GOLGA6CA6NDK9 693 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 GOLGA6BA6NDN3 693 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 TLX3O43711 291 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 HEXIM1O94992 359 aaKnown RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 PGLSO95336 258 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 MPOP05164 745 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 CELA2BP08218 269 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 CD48P09326 243 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 GOLGA6DP0CG33 693 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 MX2P20592 715 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 CA4P22748 312 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 IL4RP24394 825 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 RBMS1P29558 406 aaKnown RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 GARSP41250 739 aaKnown RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 LSSP48449 732 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 EPHB1P54762 984 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 GALNT2Q10471 571 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 TRAF2Q12933 501 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 SPIDRQ14159 915 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 PAFAH1B3Q15102 231 aaKnown RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 IFI16Q16666 785 aaKnown RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 ISXQ2M1V0 245 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 ATP13A4Q4VNC1 1196 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 ODF2Q5BJF6 829 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 PERM1Q5SV97 790 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 TEX26Q8N6G2 289 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 SNIP1Q8TAD8 396 aaKnown RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 FAM71BQ8TC56 605 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 SCRN2Q96FV2 425 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 CCDC42Q96M95 316 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 COQ10AQ96MF6 247 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 NSMCE3Q96MG7 304 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 ZNF830Q96NB3 372 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 RBM15Q96T37 977 aaKnown RBP eCLIP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 SEMA3CQ99985 751 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 POLR1BQ9H9Y6 1135 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 PHPT1Q9NRX4 125 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-215ENST00000515516 GOLGA6AQ9NYA3 693 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 TTLL3Q9Y4R7 772 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 RAI2Q9Y5P3 530 aa13.69□□□□□ -0.22
TCOF1-215ENST00000515516 TMEM202A6NGA9 273 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 PSMD11O00231 422 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 MATN3O15232 486 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 MFSD11O43934 449 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 TMEM253P0C7T8 217 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 CCNCP24863 283 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 MAN1A1P33908 653 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 TRIM23P36406 574 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 ARSEP51690 589 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 MESDQ14696 234 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 CNGA3Q16281 694 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 NCBP2-AS2Q69YL0 99 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.68□□□□□ -0.22
TCOF1-215ENST00000515516 KYQ8NBH2 561 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 CCNYQ8ND76 341 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 FAM46DQ8NEK8 389 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 OR1E3Q8WZA6 343 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 PDXPQ96GD0 296 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 DNAJC7Q99615 494 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 MAK16Q9BXY0 300 aaKnown RBP13.68□□□□□ -0.22
TCOF1-215ENST00000515516 PACSIN1Q9BY11 444 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 CYP4F12Q9HCS2 524 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 THSD1Q9NS62 852 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 RBM22Q9NW64 420 aaKnown RBP eCLIP13.68□□□□□ -0.224e-6■■■■□ 24.3
TCOF1-215ENST00000515516 AMACRQ9UHK6 382 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 NENFQ9UMX5 172 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 SPEGQ15772 3267 aa13.68□□□□□ -0.22
TCOF1-215ENST00000515516 TP53BP1Q12888 1972 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-215ENST00000515516 EIF4E1BA6NMX2 242 aaKnown RBP13.67□□□□□ -0.22
TCOF1-215ENST00000515516 TMX2-CTNND1H3BSU7 103 aa13.67□□□□□ -0.22
TCOF1-215ENST00000515516 MYCLP1P12525 358 aaPredicted RBP13.67□□□□□ -0.22
TCOF1-215ENST00000515516 CTPS1P17812 591 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms