RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 NEK3P51956 506 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 EPHB1P54762 984 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 RPL26P61254 145 aaKnown RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 DSC2Q02487 901 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 ERN2Q76MJ5 926 aaKnown RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 MAATS1Q7Z4T9 603 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 KDF1Q8NAX2 398 aaPredicted RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 CCDC110Q8TBZ0 833 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 SETD7Q8WTS6 366 aaKnown RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 KDM4CQ9H3R0 1056 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 C10orf88Q9H8K7 445 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 TM7SF3Q9NS93 570 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 KLK13Q9UKR3 277 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 TPX2Q9ULW0 747 aaKnown RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 RPL26L1Q9UNX3 145 aaKnown RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 RAI2Q9Y5P3 530 aa20.28■□□□□ 0.84
USP53-208ENST00000514305 TP53BP1Q12888 1972 aaPredicted RBP20.28■□□□□ 0.84
USP53-208ENST00000514305 A0A1B0GVT2 93 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 RNASEH2AO75792 299 aaKnown RBP20.27■□□□□ 0.84
USP53-208ENST00000514305 FSBPO95073 299 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 CTSLP07711 333 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 NFKB1P19838 968 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 KCNJ1P48048 391 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 CSNK1EP49674 416 aaKnown RBP20.27■□□□□ 0.84
USP53-208ENST00000514305 DHX34Q14147 1143 aaKnown RBP20.27■□□□□ 0.84
USP53-208ENST00000514305 PPP1R7Q15435 360 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 HLA-BQ31612 363 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 ERAP2Q6P179 960 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 CHCHD4Q8N4Q1 142 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 CEP112Q8N8E3 955 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 SPATA4Q8NEY3 305 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 C1orf216Q8TAB5 229 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 ARRDC2Q8TBH0 407 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 PDCD6IPQ8WUM4 868 aaKnown RBP20.27■□□□□ 0.84
USP53-208ENST00000514305 BIRC7Q96CA5 298 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 SRPK1Q96SB4 655 aaKnown RBP20.27■□□□□ 0.84
USP53-208ENST00000514305 IL21RQ9HBE5 538 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 PCDH9Q9HC56 1237 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 SMARCAL1Q9NZC9 954 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 PCYOX1Q9UHG3 505 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 PHTF1Q9UMS5 762 aa20.27■□□□□ 0.84
USP53-208ENST00000514305 SHROOM3Q8TF72 1996 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 C16orf96A6NNT2 1141 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 ERI2A8K979 691 aaKnown RBP20.26■□□□□ 0.83
USP53-208ENST00000514305 E7EVH7 732 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 NDC80O14777 642 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 HTRA2O43464 458 aaPredicted RBP20.26■□□□□ 0.83
USP53-208ENST00000514305 EPOP01588 193 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 GKP32189 559 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 LMAN1P49257 510 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 ELP6Q0PNE2 266 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 TTC7BQ86TV6 843 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 CAMK1DQ8IU85 385 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.26■□□□□ 0.83
USP53-208ENST00000514305 ZCCHC14Q8WYQ9 949 aaKnown RBP20.26■□□□□ 0.83
USP53-208ENST00000514305 RBM15Q96T37 977 aaKnown RBP eCLIP20.26■□□□□ 0.83
USP53-208ENST00000514305 FSD1LQ9BXM9 530 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 PCOLCE2Q9UKZ9 415 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 SARDHQ9UL12 918 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 APOBEC2Q9Y235 224 aaKnown RBP20.26■□□□□ 0.83
USP53-208ENST00000514305 FNDC3AQ9Y2H6 1198 aaKnown RBP20.26■□□□□ 0.83
USP53-208ENST00000514305 MRFAP1Q9Y605 127 aa20.26■□□□□ 0.83
USP53-208ENST00000514305 PLXNA2O75051 1894 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 A0A1W2PP55 124 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 FAM47DPA6NHR8 397 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 LRRC72A6NJI9 287 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 PIGNO95427 931 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 CPP00450 1065 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 KRT14P02533 472 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 FTH1P19P0C7X4 201 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 CD27P26842 260 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 CD68P34810 354 aaPredicted RBP20.25■□□□□ 0.83
USP53-208ENST00000514305 GRIA4P48058 902 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 LSM11P83369 360 aaKnown RBP eCLIP20.25■□□□□ 0.83
USP53-208ENST00000514305 SKOR1P84550 965 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 BNC1Q01954 994 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 CDK18Q07002 472 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 NIPAL4Q0D2K0 466 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 SUZ12Q15022 739 aaKnown RBP20.25■□□□□ 0.83
USP53-208ENST00000514305 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.25■□□□□ 0.83
USP53-208ENST00000514305 ZNF572Q7Z3I7 529 aaPredicted RBP20.25■□□□□ 0.83
USP53-208ENST00000514305 RAB44Q7Z6P3 723 aaPredicted RBP20.25■□□□□ 0.83
USP53-208ENST00000514305 KLHL7Q8IXQ5 586 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 SLCO2A1Q92959 643 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 TM9SF3Q9HD45 589 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 PCDHGC4Q9Y5F7 938 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 PCDHGB2Q9Y5G2 931 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 ASPMQ8IZT6 3477 aa20.25■□□□□ 0.83
USP53-208ENST00000514305 AKAP13Q12802 2813 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 TSPAN11A1L157 253 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 CTAGE15A4D2H0 777 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 AP3B1O00203 1094 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 NEMP1O14524 444 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 FLRT2O43155 660 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 PGLSO95336 258 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 CTAGE8P0CG41 777 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 CYP2A6P11509 494 aaPredicted RBP20.24■□□□□ 0.83
USP53-208ENST00000514305 PSMB4P28070 264 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 GDF10P55107 478 aa20.24■□□□□ 0.83
USP53-208ENST00000514305 SARNPP82979 210 aaKnown RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms