RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MT-CO1P00395 513 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CCNB1P14635 433 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 NR4A1P22736 598 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CD70P32970 193 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 GRIA1P42261 906 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PPP3CCP48454 512 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 GNA12Q03113 381 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 DPYSQ14117 519 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 HSP90AA5PQ58FG0 334 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC45A4Q5BKX6 768 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ARCQ7LC44 396 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PATL1Q86TB9 770 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 EFHBQ8N7U6 833 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 RBM15BQ8NDT2 890 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 OR6Y1Q8NGX8 325 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 GRIN3AQ8TCU5 1115 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 TCP10LQ8TDR4 215 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 RSPRY1Q96DX4 576 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CCT7Q99832 543 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 FSD1LQ9BXM9 530 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 A0A0U1RQS6 177 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 A0A1B0GVM2 712 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 TCRBV7S3A2A0A539 114 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 TCAF2A6NFQ2 919 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 J3QRK9 145 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 DCLK1O15075 740 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 NOL3O60936 208 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 E2F6O75461 281 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 METTL18O95568 372 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 IGLV3-25P01717 112 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 MT-ND3P03897 115 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 RHOQP17081 205 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 GARSP41250 739 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 LMNB2Q03252 620 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ZBTB17Q13105 803 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 NR1H3Q13133 447 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 DHX34Q14147 1143 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 GK3PQ14409 553 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 NADK2Q4G0N4 442 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SFT2D3Q587I9 215 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PERM1Q5SV97 790 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 MARC1Q5VT66 337 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ANKRD22Q5VYY1 191 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 GPR149Q86SP6 731 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 TMPRSS6Q8IU80 811 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 ZBTB8BQ8NAP8 495 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 HJURPQ8NCD3 748 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 OVCA2Q8WZ82 227 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SMARCD2Q92925 531 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 FBXL8Q96CD0 374 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 PGAP3Q96FM1 320 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 FAM192AQ9GZU8 254 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 OSBPL2Q9H1P3 480 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 SEMA6AQ9H2E6 1030 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 EPS8L2Q9H6S3 715 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 CLEC1BQ9P126 229 aa8.73□□□□□ -1.01
LIMCH1-209ENST00000509277 C15orf38-AP3S2A0A0A6YYH1 394 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 GIPC1O14908 333 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 F7P08709 466 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CTSOP43234 321 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 MAGEA4P43358 317 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 DSC2Q02487 901 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 MAPK11Q15759 364 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 AAK1Q2M2I8 961 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 RALGPS1Q5JS13 557 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 RNF43Q68DV7 783 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 B3GNT6Q6ZMB0 384 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF572Q7Z3I7 529 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ARPINQ7Z6K5 226 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF567Q8N184 647 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ADAMTS19Q8TE59 1207 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 RMDN1Q96DB5 314 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 SNF8Q96H20 258 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ZFRQ96KR1 1074 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CINPQ9BW66 212 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 KLHL25Q9H0H3 589 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 DZANK1Q9NVP4 752 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 IL1RAPL1Q9NZN1 696 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 VPS51Q9UID3 782 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF510Q9Y2H8 683 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 FIS1Q9Y3D6 152 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 GOLGA4Q13439 2230 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CASQ2O14958 399 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 FGF10O15520 208 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ZWINTO95229 277 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 PRKCGP05129 697 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CD86P42081 329 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC6A11P48066 632 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ENTPD1P49961 510 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 RHOAP61586 193 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ANKDD1AQ495B1 522 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 C2orf27AQ580R0 203 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 SLC9A4Q6AI14 798 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 KLHL35Q6PF15 583 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CCDC80Q76M96 950 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 ALLCQ8N6M5 410 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 CELF5Q8N6W0 485 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.72□□□□□ -1.015e-6■■■■□ 19.4
LIMCH1-209ENST00000509277 ASIC4Q96FT7 647 aa8.72□□□□□ -1.01
LIMCH1-209ENST00000509277 LRGUKQ96M69 825 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms