RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 KLHL8Q9P2G9 620 aaPredicted RBP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 SAE1Q9UBE0 346 aaPredicted RBP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 FTSJ1Q9UET6 329 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 JRKLQ9Y4A0 524 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 TP53BP1Q12888 1972 aaPredicted RBP16.43■□□□□ 0.22
SF3A1-209ENST00000496189 TMEM131Q92545 1883 aa16.43■□□□□ 0.22
SF3A1-209ENST00000496189 SPTY2D1-AS1A0A0U1RR47 76 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 NEMP2A6NFY4 417 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 A8MX80 341 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 GIPC1O14908 333 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 RECQL5O94762 991 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 TRIM16O95361 564 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 PCCBP05166 539 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 ADRB1P08588 477 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 PECAM1P16284 738 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 ZNF30P17039 623 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 IGFALSP35858 605 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 SEMG2Q02383 582 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 ZBTB17Q13105 803 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 XRCC4Q13426 336 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 MTM1Q13496 603 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 PRKD1Q15139 912 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 TEX44Q53QW1 395 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 ZNF569Q5MCW4 686 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 N4BP2L1Q5TBK1 243 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 DBX2Q6ZNG2 339 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 GATAD2AQ86YP4 633 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 CDKL3Q8IVW4 592 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 TP53I13Q8NBR0 393 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 LPCAT1Q8NF37 534 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 SAP25Q8TEE9 199 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 NUS1Q96E22 293 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 SLC25A51Q9H1U9 297 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 CHKBQ9Y259 395 aa16.42■□□□□ 0.22
SF3A1-209ENST00000496189 ASCC3Q8N3C0 2202 aaKnown RBP16.42■□□□□ 0.22
SF3A1-209ENST00000496189 CACNB4O00305 520 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-209ENST00000496189 HEXIM1O94992 359 aaKnown RBP16.41■□□□□ 0.22
SF3A1-209ENST00000496189 CTPS1P17812 591 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 KELP23276 732 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 BLKP51451 505 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 PFN3P60673 137 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 ADCY2Q08462 1091 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 MACC1Q6ZN28 852 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 ARRDC2Q8TBH0 407 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 CCHCR1Q8TD31 782 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 HTR3CQ8WXA8 447 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 CAMK1GQ96NX5 476 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 QKIQ96PU8 341 aaKnown RBP eCLIP16.41■□□□□ 0.22
SF3A1-209ENST00000496189 MCCC1Q96RQ3 725 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-209ENST00000496189 CEP41Q9BYV8 373 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 SLC13A1Q9BZW2 595 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 MBNL1Q9NR56 388 aaKnown RBP16.41■□□□□ 0.22
SF3A1-209ENST00000496189 EVA1BQ9NVM1 165 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 TRHDEQ9UKU6 1024 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 PPIL1Q9Y3C6 166 aa16.41■□□□□ 0.22
SF3A1-209ENST00000496189 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.41■□□□□ 0.22
SF3A1-209ENST00000496189 A0A0J9YYE9 177 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 SPAARA0A1B0GVQ0 90 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 MED19A0JLT2 244 aaPredicted RBP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 GOLGA6CA6NDK9 693 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 GOLGA6BA6NDN3 693 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 PDE2AO00408 941 aaPredicted RBP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 TNFSF14O43557 240 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 FZD6O60353 706 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 SDC3O75056 442 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 TRBC1P01850 177 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 CSF2P04141 144 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 PDHA1P08559 390 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 GOLGA6DP0CG33 693 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 OTUD4Q01804 1114 aaKnown RBP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 NIPAL4Q0D2K0 466 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 RALGDSQ12967 914 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 BNIP3Q12983 259 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 INPP5AQ14642 412 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 NOMO1Q15155 1222 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 SLC14A2Q15849 920 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 CNGA3Q16281 694 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 WSCD2Q2TBF2 565 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 ITPRIPL1Q6GPH6 555 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 AADACL2Q6P093 401 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 PID1Q7Z2X4 250 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 SLC22A18ASQ8N1D0 253 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 EID2Q8N6I1 236 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 CNTD1Q8N815 330 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 ACTL9Q8TC94 416 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 PIH1D2Q8WWB5 315 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 MAIP1Q8WWC4 291 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 LRRC45Q96CN5 670 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 IMP4Q96G21 291 aaKnown RBP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 TEKT5Q96M29 485 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 NSMCE3Q96MG7 304 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 SRPK1Q96SB4 655 aaKnown RBP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 RBM15Q96T37 977 aaKnown RBP eCLIP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 MLPHQ9BV36 600 aaPredicted RBP16.4■□□□□ 0.22
SF3A1-209ENST00000496189 TLR10Q9BXR5 811 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 GLOD4Q9HC38 313 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 GOLGA6AQ9NYA3 693 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 PYCARDQ9ULZ3 195 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 DNAH14Q0VDD8 3507 aa16.4■□□□□ 0.22
SF3A1-209ENST00000496189 DOCK9Q9BZ29 2069 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms