RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 ANKRD6Q9Y2G4 727 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 TDRKHQ9Y2W6 561 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 TADA2AO75478 443 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 SLC10A3P09131 477 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 CCDC166P0CW27 439 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 CKBP12277 381 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 MYL4P12829 197 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 UGP2Q16851 508 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 GEN1Q17RS7 908 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 TRIM71Q2Q1W2 868 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 MAP3K21Q5TCX8 1036 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 MARC1Q5VT66 337 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 FBXL22Q6P050 247 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 C16orf89Q6UX73 402 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 TRIML2Q8N7C3 387 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 OR13J1Q8NGT2 312 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 HDAC10Q969S8 669 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 ERLEC1Q96DZ1 483 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 SERPINI1Q99574 410 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 NSMCE4AQ9NXX6 385 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 DOCK4Q8N1I0 1966 aa16.59■□□□□ 0.25
CCDC88B-210ENST00000494566 PATJQ8NI35 1801 aa16.58■□□□□ 0.25
CCDC88B-210ENST00000494566 MMP2P08253 660 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 PRSS56P0CW18 603 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 C10orf120Q5SQS8 335 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 FAM171A1Q5VUB5 890 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 AFMIDQ63HM1 303 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 TIGD7Q6NT04 549 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 TRIM67Q6ZTA4 783 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 KLHDC8BQ8IXV7 354 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 SCML4Q8N228 414 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 SOX17Q9H6I2 414 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 VWA8A3KMH1 1905 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 ANKRD33BA6NCL7 494 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 TMEM88BA6NKF7 163 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 PPP6CO00743 305 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 ASLP04424 464 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 GALNT3Q14435 633 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 CTXN3Q4LDR2 81 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 CCSAPQ6IQ19 270 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 ADGRG6Q86SQ4 1221 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 MON1AQ86VX9 555 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 GIPC2Q8TF65 315 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 FBXO32Q969P5 355 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 RPRD1AQ96P16 312 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 CCT7Q99832 543 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 TMEM79Q9BSE2 394 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 GPR62Q9BZJ7 368 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 MRPL46Q9H2W6 279 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 IGSF5Q9NSI5 407 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 RNF186Q9NXI6 227 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 HSFX1Q9UBD0 423 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 TSR3Q9UJK0 312 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 TLR6Q9Y2C9 796 aa16.58■□□□□ 0.24
CCDC88B-210ENST00000494566 COL4A4P53420 1690 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 SLC12A8A0AV02 714 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 TCAF2A6NFQ2 919 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 PAMP19021 973 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 TYMPP19971 482 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 CHRM3P20309 590 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 RPL5P46777 297 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 SERPINH1P50454 418 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 C1QTNF8P60827 252 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 ZNF33AQ06730 810 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 TAF10Q12962 218 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 PRKAA1Q13131 559 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 TBC1D25Q3MII6 688 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 RSPO2Q6UXX9 243 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 COLGALT2Q8IYK4 626 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 KDM1BQ8NB78 822 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 DGCR14Q96DF8 476 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 SLC39A13Q96H72 371 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 SMIM14Q96QK8 99 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 TRIM62Q9BVG3 475 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 ZYG11BQ9C0D3 744 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 SLC25A51Q9H1U9 297 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 CCSER2Q9H7U1 834 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 FNDC3AQ9Y2H6 1198 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 LRRC14BA6NHZ5 514 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 FAM155AB1AL88 458 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 AP3B1O00203 1094 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 MUSKO15146 869 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 APOA4P06727 396 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 FAM58BPP0C7Q3 252 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 CDKN2DP55273 166 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 GRM2Q14416 872 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 MGAT5BQ3V5L5 792 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 KIAA0930Q6ICG6 404 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 TMEM207Q6UWW9 146 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 FAM81AQ8TBF8 368 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 BLOC1S5Q8TDH9 187 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 LPGAT1Q92604 370 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 HSPBAP1Q96EW2 488 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 IMP4Q96G21 291 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 UROC1Q96N76 676 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 ABT1Q9ULW3 272 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 SCML2Q9UQR0 700 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 ARL5AQ9Y689 179 aa16.57■□□□□ 0.24
CCDC88B-210ENST00000494566 GNAO1P09471 354 aa16.56■□□□□ 0.24
CCDC88B-210ENST00000494566 SLC5A2P31639 672 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms