RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 QKIQ96PU8 341 aaKnown RBP eCLIP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 GLOD4Q9HC38 313 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 SLC25A13Q9UJS0 675 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 MYOCOSA0A1B0GUC4 107 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 SEPT4O43236 478 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 CCNT2O60583 730 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 SEC24AO95486 1093 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 HSMCR30P0CW71 290 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 CSH1P0DML2 217 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 CSH2P0DML3 217 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 TFEBP19484 476 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 MZF1P28698 734 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 VAC14Q08AM6 782 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 LRRC74AQ0VAA2 488 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 CRHR2Q13324 411 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 BRMS1LQ5PSV4 323 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 ANKS3Q6ZW76 656 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 MIER2Q8N344 545 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 CBR4Q8N4T8 237 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 TMEM216Q9P0N5 145 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 RCOR3Q9P2K3 495 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 ANKRD6Q9Y2G4 727 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 SNAI1O95863 264 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 GALNT3Q14435 633 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 CD101Q93033 1021 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 PNMA8BQ9ULN7 279 aaPredicted RBP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 DGKBQ9Y6T7 804 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 STK25O00506 426 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 LZTS3O60299 673 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 MT-CYBP00156 380 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 XRCC1P18887 633 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 SMAD3P84022 425 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 CMPK2Q5EBM0 449 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 ARMC4Q5T2S8 1044 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 LIPMQ5VYY2 423 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 FRMD7Q6ZUT3 714 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 UBR7Q8N806 425 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 NIPA2Q8N8Q9 360 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 OMA1Q96E52 524 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 PPP1R10Q96QC0 940 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 TSPAN18Q96SJ8 248 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 CATSPERZQ9NTU4 200 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 TPSB2P20231 275 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 CYP3A5P20815 502 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 GRIA1P42261 906 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 THOP1P52888 689 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 TPSAB1Q15661 275 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 DENND1AQ8TEH3 1009 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 DEPDC7Q96QD5 511 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 LIMD1Q9UGP4 676 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 RAD51BO15315 384 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 MED26O95402 600 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 ZNF12P17014 697 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 BCL2L1Q07817 233 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 BOP1Q14137 746 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 ZNF846Q147U1 533 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 CGB2Q6NT52 195 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 OFCC1Q8IZS5 231 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 CENPLQ8N0S6 344 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 SEMA4BQ9NPR2 832 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 COMMD8Q9NX08 183 aa16.34■□□□□ 0.21
CCDC88B-209ENST00000494080 KCNU1A8MYU2 1149 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 ZSCAN9O15535 394 aaPredicted RBP16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 ITM2AO43736 263 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 ITGAXP20702 1163 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 ZNF792Q3KQV3 632 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 ARMC12Q5T9G4 340 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 NAT8LQ8N9F0 302 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 METTL6Q8TCB7 284 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 CD99L2Q8TCZ2 262 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 BCO2Q9BYV7 579 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 SPASTQ9UBP0 616 aa16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 EIF3LQ9Y262 564 aaKnown RBP16.33■□□□□ 0.21
CCDC88B-209ENST00000494080 PENKP01210 267 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 SPATA31D3P0C874 917 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 CKBP12277 381 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF7P17097 686 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 CKMT2P17540 419 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 MAGP20916 626 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ENTPD1P49961 510 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ZNF284Q2VY69 593 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ATG14Q6ZNE5 492 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 SPATA31D4Q6ZUB0 917 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 CTU1Q7Z7A3 348 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 CACUL1Q86Y37 369 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 NRG4Q8WWG1 115 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 XYLT2Q9H1B5 865 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 TMPRSS4Q9NRS4 437 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 NADKO95544 446 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 LTA4HP09960 611 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 PCNAP12004 261 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 L1CAMP32004 1257 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 GSSP48637 474 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ST13P50502 369 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 RAB10P61026 200 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 SQLEQ14534 574 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ARL13AQ5H913 290 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 B3GNT9Q6UX72 402 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 ACBD6Q9BR61 282 aa16.33■□□□□ 0.2
CCDC88B-209ENST00000494080 PLK2Q9NYY3 685 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms