RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 A0A1W2PQ67 120 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 BRINP1O60477 761 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 CSO75390 466 aaKnown RBP23.07■■□□□ 1.28
COL9A3-213ENST00000489045 ALPIP09923 528 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 KIAA1024LP59773 190 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 PAFAH1B3Q15102 231 aaKnown RBP23.07■■□□□ 1.28
COL9A3-213ENST00000489045 CNGA3Q16281 694 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 ANKRD20A8PQ5CZ79 823 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 RALGPS1Q5JS13 557 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 CRTC1Q6UUV9 634 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 LRRC49Q8IUZ0 686 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 KCTD6Q8NC69 237 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 FUBP1Q96AE4 644 aaKnown RBP23.07■■□□□ 1.28
COL9A3-213ENST00000489045 ZNF670Q9BS34 389 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 TSPY26PQ9H489 355 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 CACNA1GO43497 2377 aa23.07■■□□□ 1.28
COL9A3-213ENST00000489045 SSU72P8A0A1W2PR75 194 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 CACNB4O00305 520 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-213ENST00000489045 MAP3K6O95382 1288 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 VIPR1P32241 457 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 GARSP41250 739 aaKnown RBP23.06■■□□□ 1.28
COL9A3-213ENST00000489045 GALNT2Q10471 571 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 PDK2Q15119 407 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 ESRP1Q6NXG1 681 aaKnown RBP23.06■■□□□ 1.28
COL9A3-213ENST00000489045 VSTM4Q8IW00 320 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 PELI3Q8N2H9 469 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 TEX26Q8N6G2 289 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 NUS1Q96E22 293 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 COQ10AQ96MF6 247 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 ABHD10Q9NUJ1 306 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 ZNHIT6Q9NWK9 470 aaKnown RBP23.06■■□□□ 1.28
COL9A3-213ENST00000489045 LCMT1Q9UIC8 334 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 PHTF1Q9UMS5 762 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 IGSF10Q6WRI0 2623 aa23.06■■□□□ 1.28
COL9A3-213ENST00000489045 TMEM202A6NGA9 273 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 HEXIM1O94992 359 aaKnown RBP23.05■■□□□ 1.28
COL9A3-213ENST00000489045 PGLSO95336 258 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 TNFP01375 233 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 TMEM253P0C7T8 217 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 DENND2CQ68D51 928 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 PDZD3Q86UT5 571 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 GKN2Q86XP6 184 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 KYQ8NBH2 561 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 OR56A4Q8NGH8 313 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 SCG3Q8WXD2 468 aaKnown RBP23.05■■□□□ 1.28
COL9A3-213ENST00000489045 OR1E3Q8WZA6 343 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 NAT6Q93015 286 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 WDR26Q9H7D7 661 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 FGF22Q9HCT0 170 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 SIRPGQ9P1W8 387 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 GULP1Q9UBP9 304 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 PADI4Q9UM07 663 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 DGKBQ9Y6T7 804 aa23.05■■□□□ 1.28
COL9A3-213ENST00000489045 NPIPB15A6NHN6 443 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-213ENST00000489045 AKR1B10O60218 316 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 USP12O75317 370 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 KRT7P08729 469 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 TPM1P09493 284 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 CYP2A6P11509 494 aaPredicted RBP23.04■■□□□ 1.28
COL9A3-213ENST00000489045 LHCGRP22888 699 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 NFKBIAP25963 317 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 MAN1A1P33908 653 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 TRIM23P36406 574 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 EIF2S3P41091 472 aaKnown RBP23.04■■□□□ 1.28
COL9A3-213ENST00000489045 ITKQ08881 620 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 PTPRRQ15256 657 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 TSR1Q2NL82 804 aaKnown RBP23.04■■□□□ 1.28
COL9A3-213ENST00000489045 ARMC12Q5T9G4 340 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 PNCKQ6P2M8 343 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 LVRNQ6Q4G3 990 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 MAP7D3Q8IWC1 876 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 SDR16C5Q8N3Y7 309 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 ARL10Q8N8L6 244 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 RNF214Q8ND24 703 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 MAML1Q92585 1016 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 FAF2Q96CS3 445 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 RBM15Q96T37 977 aaKnown RBP eCLIP23.04■■□□□ 1.28
COL9A3-213ENST00000489045 CHP1Q99653 195 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 SEMA3CQ99985 751 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 LGR4Q9BXB1 951 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 MRPL40Q9NQ50 206 aaKnown RBP23.04■■□□□ 1.28
COL9A3-213ENST00000489045 GPR34Q9UPC5 381 aa23.04■■□□□ 1.28
COL9A3-213ENST00000489045 MATN3O15232 486 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 MFAP3LO75121 409 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 MPOP05164 745 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 HOXC4P09017 264 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-213ENST00000489045 KELP23276 732 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 MESDQ14696 234 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 IFI16Q16666 785 aaKnown RBP23.03■■□□□ 1.28
COL9A3-213ENST00000489045 ISXQ2M1V0 245 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 ZFYVE27Q5T4F4 411 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 TIGD7Q6NT04 549 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-213ENST00000489045 PQLC3Q8N755 202 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 TPCN2Q8NHX9 752 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 SNIP1Q8TAD8 396 aaKnown RBP23.03■■□□□ 1.28
COL9A3-213ENST00000489045 SCRN2Q96FV2 425 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 MCCC1Q96RQ3 725 aaPredicted RBP23.03■■□□□ 1.28
COL9A3-213ENST00000489045 CCDC3Q9BQI4 270 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 POLR1EQ9GZS1 481 aaKnown RBP23.03■■□□□ 1.28
COL9A3-213ENST00000489045 SPTLC3Q9NUV7 552 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms