RNA–Protein interactions for RNA: ENST00000486806.1

MCF2L-227, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 361 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-227ENST00000486806 TSPYL1Q9H0U9 437 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 PLAC1Q9HBJ0 212 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 MRM3Q9HC36 420 aaKnown RBP9.6□□□□□ -0.87
MCF2L-227ENST00000486806 C11orf16Q9NQ32 467 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 ITM2CQ9NQX7 267 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 FBXL12Q9NXK8 326 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.6□□□□□ -0.87
MCF2L-227ENST00000486806 BFARQ9NZS9 450 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 HACD3Q9P035 362 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 EBF1Q9UH73 591 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 GGT7Q9UJ14 662 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 RIMKLBQ9ULI2 386 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 SOX13Q9UN79 622 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 TTC28Q96AY4 2481 aa9.6□□□□□ -0.87
MCF2L-227ENST00000486806 BDP1A6H8Y1 2624 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 A0A0C4DFX4 3053 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 A0A0U1RQS6 177 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 C1orf232A0A0U1RR37 186 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 HEATR9A2RTY3 570 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 SDR42E2A6NKP2 422 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TNFRSF10AO00220 468 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PSMD11O00231 422 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 C1SP09871 688 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 ACADMP11310 421 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CYP2A6P11509 494 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 GM2AP17900 193 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 NFKBIAP25963 317 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 HMGCLP35914 325 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 STC1P52823 247 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 ACVR1Q04771 509 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CCDC15Q0P6D6 951 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PDIA2Q13087 525 aaKnown RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TAF1AQ15573 450 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CNGA3Q16281 694 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 BBS9Q3SYG4 887 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TMEM52BQ4KMG9 183 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CCDC38Q502W7 563 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PCID2Q5JVF3 399 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TMC3Q7Z5M5 1100 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TMEM135Q86UB9 458 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 ZBED8Q8IZ13 594 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 MAML2Q8IZL2 1156 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CBARPQ8N350 705 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 FBXL6Q8N531 539 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PAF1Q8N7H5 531 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PPHLN1Q8NEY8 458 aaKnown RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PEX13Q92968 403 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 PBXIP1Q96AQ6 731 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 STAMBPL1Q96FJ0 436 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 EBNA1BP2Q99848 306 aaKnown RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 OMDQ99983 421 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 C19orf43Q9BQ61 176 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TRIM56Q9BRZ2 755 aaKnown RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 COL25A1Q9BXS0 654 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 EPHX3Q9H6B9 360 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 ZFYVE1Q9HBF4 777 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 SAYSD1Q9NPB0 183 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 TREX1Q9NSU2 369 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 SPATA6Q9NWH7 488 aaPredicted RBP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 BCCIPQ9P287 314 aaKnown RBP eCLIP9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CHMP2BQ9UQN3 213 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 ARL5AQ9Y689 179 aa9.59□□□□□ -0.87
MCF2L-227ENST00000486806 CCDC163A0A0D9SF12 145 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 ZCWPW2A0A1B0GU75 182 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 FAM237BA0A1B0GVD1 139 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 TSPAN6O43657 245 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 ZNF217O75362 1048 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 CLDN7O95471 211 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 CRTAMO95727 393 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 ELFN1P0C7U0 828 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 PGAM1P18669 254 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 XPAP23025 273 aaPredicted RBP9.58□□□□□ -0.88
MCF2L-227ENST00000486806 ADRA1DP25100 572 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 ELK3P41970 407 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 FAM193AP78312 1265 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 SEMG2Q02383 582 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 CREB5Q02930 508 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 PTSQ03393 145 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 SFSWAPQ12872 951 aaKnown RBP9.58□□□□□ -0.88
MCF2L-227ENST00000486806 SEPT6Q14141 434 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 MAP7D1Q3KQU3 841 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 TMEM259Q4ZIN3 620 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 TSTD2Q5T7W7 516 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 STEAP4Q687X5 459 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 DENND2CQ68D51 928 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 EMBQ6PCB8 327 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.58□□□□□ -0.88
MCF2L-227ENST00000486806 LIPIQ6XZB0 460 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 CEP128Q6ZU80 1094 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 NLRP9Q7RTR0 991 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 CCNJLQ8IV13 435 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 RAVER1Q8IY67 606 aaKnown RBP9.58□□□□□ -0.88
MCF2L-227ENST00000486806 FBXO36Q8NEA4 188 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 OR13J1Q8NGT2 312 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 CAVIN3Q969G5 261 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 DNAJC1Q96KC8 554 aaKnown RBP9.58□□□□□ -0.88
MCF2L-227ENST00000486806 COQ10AQ96MF6 247 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 ZNF778Q96MU6 729 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 NAT9Q9BTE0 207 aa9.58□□□□□ -0.88
MCF2L-227ENST00000486806 TPSD1Q9BZJ3 242 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms