RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 CKMT1AP12532 417 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 NFKBIAP25963 317 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 PEX5P50542 639 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 SRP54P61011 504 aaKnown RBP17.7■□□□□ 0.42
COL6A1-204ENST00000486023 ILKQ13418 452 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 MTM1Q13496 603 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 ARHGEF7Q14155 803 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 CNGA3Q16281 694 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 ALG11Q2TAA5 492 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 CRTC1Q6UUV9 634 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 TSPAN33Q86UF1 283 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 RHOT1Q8IXI2 618 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 NDUFAF2Q8N183 169 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 FAF2Q96CS3 445 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 LRRC61Q9BV99 259 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 CEP41Q9BYV8 373 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 CLPBQ9H078 707 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 SIRPGQ9P1W8 387 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 INTUQ9ULD6 942 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 CHKBQ9Y259 395 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 PCDHA13Q9Y5I0 950 aa17.7■□□□□ 0.42
COL6A1-204ENST00000486023 CFAP69A5D8W1 941 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 NPIPB15A6NHN6 443 aaPredicted RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 TOR1BO14657 336 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 YY2O15391 372 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 MTA2O94776 668 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 TNFP01375 233 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 HLA-DQB2P05538 268 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 ETV3P41162 512 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 SLC1A1P43005 524 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 BLKP51451 505 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 DUSP3P51452 185 aaPredicted RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 HK3P52790 923 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 NAP1L1P55209 391 aaKnown RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 E2F1Q01094 437 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 INSM1Q01101 510 aaPredicted RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 RALGPS1Q5JS13 557 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 KAZNQ674X7 775 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 ZCCHC8Q6NZY4 707 aaKnown RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 USP45Q70EL2 814 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 HSD11B1LQ7Z5J1 315 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 ATL2Q8NHH9 583 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 IFI44Q8TCB0 444 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 FUBP1Q96AE4 644 aaKnown RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 NUS1Q96E22 293 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 WDR92Q96MX6 357 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 TSGA13Q96PP4 275 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 MRPL40Q9NQ50 206 aaKnown RBP17.69■□□□□ 0.42
COL6A1-204ENST00000486023 EVA1BQ9NVM1 165 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 HAUS2Q9NVX0 235 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 CD84Q9UIB8 345 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 CLCA2Q9UQC9 943 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 AK5Q9Y6K8 562 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 CSNK1G3Q9Y6M4 447 aa17.69■□□□□ 0.42
COL6A1-204ENST00000486023 TDRD6O60522 2096 aaKnown RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 TMEM202A6NGA9 273 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 C3orf70A6NLC5 250 aaPredicted RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 SRRM3A6NNA2 597 aaPredicted RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 TAF4O00268 1085 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 HEXIM1O94992 359 aaKnown RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 RASGRP1O95267 797 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 KRT10P13645 584 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 GM2AP17900 193 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 CYLC1P35663 651 aaPredicted RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 CACNA1BQ00975 2339 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 NIPAL4Q0D2K0 466 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 NR0B2Q15466 257 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 KCTD16Q68DU8 428 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 PNCKQ6P2M8 343 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 GUSBP11Q6P575 273 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 MFSD7Q6UXD7 560 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 EFL1Q7Z2Z2 1120 aaKnown RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 KDELC2Q7Z4H8 507 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 GAS2L3Q86XJ1 694 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 WDFY3Q8IZQ1 3526 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 PELI3Q8N2H9 469 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 PLD5Q8N7P1 536 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 PDCD7Q8N8D1 485 aaKnown RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 TPCN2Q8NHX9 752 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 PIH1D2Q8WWB5 315 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 MAML1Q92585 1016 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 SCRN2Q96FV2 425 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 LGR4Q9BXB1 951 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 WDR26Q9H7D7 661 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 SYNDIG1Q9H7V2 258 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 DDX56Q9NY93 547 aaKnown RBP17.68■□□□□ 0.42
COL6A1-204ENST00000486023 ALG6Q9Y672 507 aa17.68■□□□□ 0.42
COL6A1-204ENST00000486023 LY6G6EA0A0G2JKS1 128 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 SOWAHDA6NJG2 315 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 LMO7DNF2Z398 122 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 MT-CO3P00414 261 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 LHCGRP22888 699 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 CD86P42081 329 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 IHHQ14623 411 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 AGERQ15109 404 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 ELOCQ15369 112 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 ESRP1Q6NXG1 681 aaKnown RBP17.67■□□□□ 0.42
COL6A1-204ENST00000486023 RFLNAQ6ZTI6 216 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 Q6ZVL8 140 aa17.67■□□□□ 0.42
COL6A1-204ENST00000486023 CCDC170Q8IYT3 715 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms