RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 USP29Q9HBJ7 922 aa15.94■□□□□ 0.14
UPF3A-208ENST00000484246 KLHL8Q9P2G9 620 aaPredicted RBP15.94■□□□□ 0.14
UPF3A-208ENST00000484246 CHKBQ9Y259 395 aa15.94■□□□□ 0.14
UPF3A-208ENST00000484246 CA5BQ9Y2D0 317 aa15.94■□□□□ 0.14
UPF3A-208ENST00000484246 CACNA1AO00555 2505 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 POM121BA6NF01 834 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 H0Y8X5 98 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 RECQL5O94762 991 aaPredicted RBP15.93■□□□□ 0.14
UPF3A-208ENST00000484246 EPOP01588 193 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 PYGBP11216 843 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 CD59P13987 128 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 NFKB1P19838 968 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 CLDN2P57739 230 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 YPEL5P62699 121 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 CCDC173Q0VFZ6 552 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 MTM1Q13496 603 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 LRRC14Q15048 493 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 QPCTQ16769 361 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 KDELC1Q6UW63 502 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 B4GALNT4Q76KP1 1039 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 SPATA13Q96N96 652 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 RBM15Q96T37 977 aaKnown RBP eCLIP15.93■□□□□ 0.14
UPF3A-208ENST00000484246 IL21RQ9HBE5 538 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 TM7SF3Q9NS93 570 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 FAM153AQ9UHL3 310 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 PLXNA2O75051 1894 aa15.93■□□□□ 0.14
UPF3A-208ENST00000484246 GON4LQ3T8J9 2241 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 TCRBV7S2A1N4TA0A589 114 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 KCNK3O14649 394 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 LZTS3O60299 673 aaPredicted RBP15.92■□□□□ 0.14
UPF3A-208ENST00000484246 STK10O94804 968 aaKnown RBP15.92■□□□□ 0.14
UPF3A-208ENST00000484246 TEAD1P28347 426 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 ARRB1P49407 418 aaPredicted RBP15.92■□□□□ 0.14
UPF3A-208ENST00000484246 STC1P52823 247 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 EPHB1P54762 984 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 IRF4Q15306 451 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 SHBQ15464 509 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 ITPRIPL1Q6GPH6 555 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 Q6ZSR6 202 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 ZNF765Q7L2R6 523 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 PTAR1Q7Z6K3 402 aaPredicted RBP15.92■□□□□ 0.14
UPF3A-208ENST00000484246 LPCAT1Q8NF37 534 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 RTP4Q96DX8 246 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 DTD2Q96FN9 168 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 PPP1R2P1Q96PQ5 205 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 MBNL1Q9NR56 388 aaKnown RBP15.92■□□□□ 0.14
UPF3A-208ENST00000484246 R3HDM2Q9Y2K5 976 aaKnown RBP15.92■□□□□ 0.14
UPF3A-208ENST00000484246 ZKSCAN5Q9Y2L8 839 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 JRKLQ9Y4A0 524 aa15.92■□□□□ 0.14
UPF3A-208ENST00000484246 SPTY2D1-AS1A0A0U1RR47 76 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 LOC285095A0A1B0GVY8 99 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 C5orf60A6NFR6 353 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 ANKRD66B4E2M5 251 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 FLRT2O43155 660 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 NDST3O95803 873 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 HOXC4P09017 264 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 ALPIP09923 528 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 EPHA8P29322 1005 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 HNF1BP35680 557 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 SEMG2Q02383 582 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 CDK18Q07002 472 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 MPP3Q13368 585 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 ARHGEF7Q14155 803 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 OASLQ15646 514 aaKnown RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 CDKN3Q16667 212 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 LRRC66Q68CR7 880 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 ESRP1Q6NXG1 681 aaKnown RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 DARS2Q6PI48 645 aaKnown RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 CRTC1Q6UUV9 634 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 PID1Q7Z2X4 250 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 KANSL1Q7Z3B3 1105 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 TSPAN33Q86UF1 283 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 NLRP8Q86W28 1048 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 SPATA22Q8NHS9 363 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 OXNAD1Q96HP4 312 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 TBATAQ96M53 351 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 SRPK1Q96SB4 655 aaKnown RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 MLPHQ9BV36 600 aaPredicted RBP15.91■□□□□ 0.14
UPF3A-208ENST00000484246 COQ6Q9Y2Z9 468 aa15.91■□□□□ 0.14
UPF3A-208ENST00000484246 WDR87Q6ZQQ6 2873 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 KCNN4O15554 427 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 LIASO43766 372 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 MT-CYBP00156 380 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-208ENST00000484246 CTPS1P17812 591 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 MSNP26038 577 aaKnown RBP15.9■□□□□ 0.14
UPF3A-208ENST00000484246 WNT3AP56704 352 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 DPTQ07507 201 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 FZD2Q14332 565 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 SIX1Q15475 284 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-208ENST00000484246 UAP1L1Q3KQV9 507 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 ANKRD20A2Q5SQ80 823 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 ANKRD20A1Q5TYW2 823 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 ANKRD20A3Q5VUR7 823 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 DRICH1Q6PGQ1 229 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-208ENST00000484246 MACC1Q6ZN28 852 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 HSD11B1LQ7Z5J1 315 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 TECPR1Q7Z6L1 1165 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 PARGQ86W56 976 aa15.9■□□□□ 0.14
UPF3A-208ENST00000484246 NRSN1Q8IZ57 195 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms