RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 CCL4P13236 92 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 CCNB1P14635 433 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 LIFP15018 202 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 DESP17661 470 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 CR2P20023 1033 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 MMP8P22894 467 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 MAN1A1P33908 653 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 UGT1A3P35503 534 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 TRIM23P36406 574 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 AIF1P55008 147 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 HDAC4P56524 1084 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 RAB15P59190 212 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 SKIDA1Q1XH10 827 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 VWA3BQ502W6 1294 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 KLHDC7AQ5VTJ3 777 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 NOP9Q86U38 636 aaKnown RBP12.64□□□□□ -0.39
SKA3-206ENST00000475251 CACNA2D3Q8IZS8 1091 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 CCDC185Q8N715 623 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 PLA2G15Q8NCC3 412 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 OR4D9Q8NGE8 314 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 C9orf43Q8TAL5 461 aaPredicted RBP12.64□□□□□ -0.39
SKA3-206ENST00000475251 GPT2Q8TD30 523 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 EPS8L1Q8TE68 723 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 ZDHHC1Q8WTX9 485 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 KIAA1143Q96AT1 154 aaPredicted RBP12.64□□□□□ -0.39
SKA3-206ENST00000475251 TEFMQ96QE5 360 aaKnown RBP12.64□□□□□ -0.39
SKA3-206ENST00000475251 NOL6Q9H6R4 1146 aaKnown RBP12.64□□□□□ -0.39
SKA3-206ENST00000475251 MRPL40Q9NQ50 206 aaKnown RBP12.64□□□□□ -0.39
SKA3-206ENST00000475251 FHOD1Q9Y613 1164 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 ANKRD36A6QL64 1941 aa12.64□□□□□ -0.39
SKA3-206ENST00000475251 COL12A1Q99715 3063 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 IGHV5-10-1A0A0J9YXX1 117 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 FAM170AA1A519 330 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 WASH4PA8MWX3 477 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 B4GAT1O43505 415 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 FGF3P11487 239 aaPredicted RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 KRT3P12035 628 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 MYCLP1P12525 358 aaPredicted RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 NFKBIAP25963 317 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 HTR7P34969 479 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 CSNK1DP48730 415 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 LIMK2P53671 638 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 OR1D5P58170 312 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 NCAPHQ15003 741 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 CYTH1Q15438 398 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 RAB6CQ53S08 254 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 DCAF12Q5T6F0 453 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 LIPIQ6XZB0 460 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 TRIM72Q6ZMU5 477 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 C17orf82Q86X59 251 aaPredicted RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 CAMK1DQ8IU85 385 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 UMODL1-AS1Q8N2C9 162 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 FAM26EQ8N5C1 309 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 RCBTB1Q8NDN9 531 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 CCDC74BQ96LY2 380 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 NUDT22Q9BRQ3 303 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 ZMYND15Q9H091 742 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 RAB6CQ9H0N0 254 aa12.63□□□□□ -0.39
SKA3-206ENST00000475251 CARS2Q9HA77 564 aaKnown RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 PHPT1Q9NRX4 125 aaPredicted RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 TRNAU1APQ9NX07 287 aaKnown RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 TLN1Q9Y490 2541 aaKnown RBP12.63□□□□□ -0.39
SKA3-206ENST00000475251 DOPEY2Q9Y3R5 2298 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 ANKRD62A6NC57 917 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 B4E171 279 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 F8VZ95 297 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 CREB3O43889 395 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 RAD1O60671 282 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 CYP1A1P04798 512 aaPredicted RBP12.62□□□□□ -0.39
SKA3-206ENST00000475251 UCHL3P15374 230 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 GPD1P21695 349 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 ERCC5P28715 1186 aaPredicted RBP12.62□□□□□ -0.39
SKA3-206ENST00000475251 TSPAN7P41732 249 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 NOP2P46087 812 aaKnown RBP12.62□□□□□ -0.39
SKA3-206ENST00000475251 MAZP56270 477 aaKnown RBP12.62□□□□□ -0.39
SKA3-206ENST00000475251 MC1RQ01726 317 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 CDR2Q01850 454 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 BCL2L1Q07817 233 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 RALGDSQ12967 914 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 SEPT6Q14141 434 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 AFMIDQ63HM1 303 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 KCTD16Q68DU8 428 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 PNCKQ6P2M8 343 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 NYAP1Q6ZVC0 841 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 DPPA4Q7L190 304 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 SRLQ86TD4 932 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 SFTPA2Q8IWL1 248 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 MLKLQ8NB16 471 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 NETO2Q8NC67 525 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 CCL4L1Q8NHW4 92 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 JOSD2Q8TAC2 188 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 ART4Q93070 314 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 SLC45A3Q96JT2 553 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 C11orf70Q9BRQ4 267 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 TUBGCP2Q9BSJ2 902 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 SELENOOQ9BVL4 669 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 NAA15Q9BXJ9 866 aaKnown RBP12.62□□□□□ -0.39
SKA3-206ENST00000475251 STK33Q9BYT3 514 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 KLC2Q9H0B6 622 aa12.62□□□□□ -0.39
SKA3-206ENST00000475251 SPATS2LQ9NUQ6 558 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms