RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 UGT1A9O60656 530 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 PIAS1O75925 651 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 ZWINTO95229 277 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 PIGNO95427 931 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 ITGA2BP08514 1039 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 KRT4P19013 534 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 OGNP20774 298 aaKnown RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 ARNTP27540 789 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 CCNFP41002 786 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 OPRD1P41143 372 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 SERPINB8P50452 374 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 SLC18A2Q05940 514 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 KDSRQ06136 332 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 PTPRNQ16849 979 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 FNDC3BQ53EP0 1204 aaKnown RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 AFTPHQ6ULP2 937 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 GDPD4Q6W3E5 623 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 SDCCAG8Q86SQ7 713 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 C2CD4AQ8NCU7 369 aaPredicted RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 OR2A12Q8NGT7 310 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 OR6P1Q8NGX9 317 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 OR6K2Q8NGY2 324 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 CYB5D2Q8WUJ1 264 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 HDAC10Q969S8 669 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 ISL2Q96A47 359 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 DNAJC1Q96KC8 554 aaKnown RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 GPR63Q9BZJ6 419 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 IQCGQ9H095 443 aaKnown RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 UGT1A7Q9HAW7 530 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 UGT1A10Q9HAW8 530 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 UGT1A8Q9HAW9 530 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 INTS9Q9NV88 658 aaKnown RBP12.86□□□□□ -0.35
VPS13D-205ENST00000473099 DKK3Q9UBP4 350 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 SLC2A6Q9UGQ3 507 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 FBXO5Q9UKT4 447 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 VPS9D1Q9Y2B5 631 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF711Q9Y462 761 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 SPO11Q9Y5K1 396 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 ARL5AQ9Y689 179 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 NUMBLQ9Y6R0 609 aa12.86□□□□□ -0.35
VPS13D-205ENST00000473099 A0A1W2PPM1 405 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TSPAN11A1L157 253 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 CCDC78A2IDD5 438 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TBC1D3BA6NDS4 549 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TTC34A8MYJ7 566 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 ARNTLO00327 626 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TRIM24O15164 1050 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 BNIP3LO60238 219 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 SHOX2O60902 331 aaPredicted RBP12.85□□□□□ -0.35
VPS13D-205ENST00000473099 KAT7O95251 611 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 PRNPP04156 253 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 CHN1P15882 459 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 HMGCLP35914 325 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 SLC6A11P48066 632 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 CD151P48509 253 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 PTPN5P54829 565 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 SEPT7Q16181 437 aaKnown RBP12.85□□□□□ -0.35
VPS13D-205ENST00000473099 HNRNPA1L2Q32P51 320 aaKnown RBP12.85□□□□□ -0.35
VPS13D-205ENST00000473099 MROH9Q5TGP6 573 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 ZDHHC20Q5W0Z9 365 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF470Q6ECI4 717 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TPRG1Q6ZUI0 275 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 CCDC91Q7Z6B0 441 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 LCA5Q86VQ0 697 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TTC30BQ8N4P2 665 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 OTUD6BQ8N6M0 293 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 MDGA1Q8NFP4 955 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 OR4K2Q8NGD2 314 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS13D-205ENST00000473099 SCRN2Q96FV2 425 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 CDKN2AIPNLQ96HQ2 116 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 APOPT1Q96IL0 206 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 VPS39Q96JC1 886 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 MCCC1Q96RQ3 725 aaPredicted RBP12.85□□□□□ -0.35
VPS13D-205ENST00000473099 TCF12Q99081 682 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 AGAP2Q99490 1192 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 GPR22Q99680 433 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 MCMBPQ9BTE3 642 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 UBE2ZQ9H832 354 aaPredicted RBP12.85□□□□□ -0.35
VPS13D-205ENST00000473099 ZFYVE1Q9HBF4 777 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 CATSPERZQ9NTU4 200 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 GTSE1Q9NYZ3 720 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 SUN2Q9UH99 717 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 IL36AQ9UHA7 158 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 STARD13Q9Y3M8 1113 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 PSAT1Q9Y617 370 aa12.85□□□□□ -0.35
VPS13D-205ENST00000473099 F5P12259 2224 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 PRRT4C9JH25 899 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 COPEO14579 308 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 MBTPS2O43462 519 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 TYROBPO43914 113 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 RFPL1O75677 317 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 PRKCGP05129 697 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 MPOP05164 745 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 UGT2B4P06133 528 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 PIRTP0C851 137 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 CYP2A6P11509 494 aaPredicted RBP12.84□□□□□ -0.35
VPS13D-205ENST00000473099 ZNF30P17039 623 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 SLC8A1P32418 973 aa12.84□□□□□ -0.35
VPS13D-205ENST00000473099 PPARGP37231 505 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms