RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 USP32Q8NFA0 1604 aa5.72□□□□□ -1.49
CCDC39-202ENST00000471307 TOPAZ1Q8N9V7 1692 aa5.72□□□□□ -1.49
CCDC39-202ENST00000471307 TTC21BQ7Z4L5 1316 aa5.72□□□□□ -1.49
CCDC39-202ENST00000471307 TTC21AQ8NDW8 1320 aa5.72□□□□□ -1.49
CCDC39-202ENST00000471307 PARD3Q8TEW0 1356 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 AKAP12Q02952 1782 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 IGLV5-37A0A075B6J1 123 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 KRT36O76013 467 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 CH25HO95992 272 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 RPL3P39023 403 aaKnown RBP5.71□□□□□ -1.5
CCDC39-202ENST00000471307 BLKP51451 505 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 MON1AQ86VX9 555 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 SFTPA2Q8IWL1 248 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 SPATA5Q8NB90 893 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 TRIB2Q92519 343 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 ADGRG7Q96K78 797 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 USP6P35125 1406 aa5.71□□□□□ -1.5
CCDC39-202ENST00000471307 C17orf113A0A1B0GUU1 675 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 TSPAN3O60637 253 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 GAGE7O76087 117 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 VNN2O95498 520 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 WEE2P0C1S8 567 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 GAGE12FP0CL80 117 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 GAGE12GP0CL81 117 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 GAGE12IP0CL82 117 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 RXRAP19793 462 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 LIFRP42702 1097 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 TRAPPC10P48553 1259 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 GAGE1Q13065 139 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 GAGE4Q13068 117 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 CAPSQ13938 189 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF628Q5EBL2 1059 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 C10orf62Q5T681 223 aaPredicted RBP5.7□□□□□ -1.5
CCDC39-202ENST00000471307 CCDC129Q6ZRS4 1044 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 C2CD5Q86YS7 1000 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 MB21D2Q8IYB1 491 aaPredicted RBP5.7□□□□□ -1.5
CCDC39-202ENST00000471307 LILRB1Q8NHL6 650 aaPredicted RBP5.7□□□□□ -1.5
CCDC39-202ENST00000471307 RAB40AQ8WXH6 277 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 RILPL2Q969X0 211 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 COG3Q96JB2 828 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 LRFN5Q96NI6 719 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 YME1L1Q96TA2 773 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 CD180Q99467 661 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 STN1Q9H668 368 aaKnown RBP5.7□□□□□ -1.5
CCDC39-202ENST00000471307 NFS1Q9Y697 457 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 SSH2Q76I76 1423 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 MON2Q7Z3U7 1717 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 NPHP3Q7Z494 1330 aa5.7□□□□□ -1.5
CCDC39-202ENST00000471307 KIF1AQ12756 1690 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 VWA3AA6NCI4 1184 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 WNT9BO14905 357 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 TIMM23O14925 209 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 TOM1O60784 492 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF432O94892 652 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 PPP2R1AP30153 589 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 CYP4A11Q02928 519 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 GRSF1Q12849 480 aaKnown RBP eCLIP5.69□□□□□ -1.5
CCDC39-202ENST00000471307 SNTA1Q13424 505 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF672Q499Z4 452 aaPredicted RBP5.69□□□□□ -1.5
CCDC39-202ENST00000471307 FBXO43Q4G163 708 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 FBXO47Q5MNV8 452 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 BRINP3Q76B58 766 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 CHD1LQ86WJ1 897 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 CCDC105Q8IYK2 499 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 CPXM2Q8N436 756 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 NKAPQ8N5F7 415 aaKnown RBP5.69□□□□□ -1.5
CCDC39-202ENST00000471307 RFLNBQ8N5W9 214 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 RFWD2Q8NHY2 731 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 CNOT9Q92600 299 aaKnown RBP5.69□□□□□ -1.5
CCDC39-202ENST00000471307 SLITRK1Q96PX8 696 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 RPS6KC1Q96S38 1066 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 GAREM1Q9H706 876 aa5.69□□□□□ -1.5
CCDC39-202ENST00000471307 ARHGAP10A1A4S6 786 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 FAM90A7PA6NKC0 464 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 SH2D7A6NKC9 451 aaPredicted RBP5.68□□□□□ -1.5
CCDC39-202ENST00000471307 FAM90A22PA8MWA6 464 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 FAM90A12PA8MX19 464 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 FAM90A23PA8MXZ1 464 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 SLC25A17O43808 307 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 IGKV3-20P01619 116 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 IGHV4-30-4P0DP06 118 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF8P17098 575 aaPredicted RBP5.68□□□□□ -1.5
CCDC39-202ENST00000471307 BIRC2Q13490 618 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 ZRSR1Q15695 479 aaKnown RBP5.68□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF718Q3SXZ3 478 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 EXOC8Q8IYI6 725 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 ZNF114Q8NC26 417 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 HES6Q96HZ4 224 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 ISCA1Q9BUE6 129 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 RETREG1Q9H6L5 497 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 OR6C3Q9NZP0 311 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 NDRG3Q9UGV2 375 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 IQSEC2Q5JU85 1478 aa5.68□□□□□ -1.5
CCDC39-202ENST00000471307 SBNO1A3KN83 1393 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 KIF20BQ96Q89 1820 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 TCEA3O75764 348 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 PTPN2P17706 415 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 RYKP34925 604 aa5.67□□□□□ -1.5
CCDC39-202ENST00000471307 KRTAP10-7P60409 375 aaPredicted RBP5.67□□□□□ -1.5
CCDC39-202ENST00000471307 YWHAZP63104 245 aaKnown RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms