RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 MYO1FO00160 1098 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CASC3O15234 703 aaKnown RBP16.35■□□□□ 0.21
COL9A3-208ENST00000469802 MFSD11O43934 449 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CPP00450 1065 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 MPOP05164 745 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CD48P09326 243 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CASP14P31944 242 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 MMP13P45452 471 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 GABREP78334 506 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 TRAF2Q12933 501 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CNGA3Q16281 694 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 ZSCAN23Q3MJ62 389 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CCDC122Q5T0U0 273 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 RBM44Q6ZP01 1051 aaKnown RBP16.35■□□□□ 0.21
COL9A3-208ENST00000469802 LSMEM2Q8N112 164 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CBARPQ8N350 705 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-208ENST00000469802 TEX26Q8N6G2 289 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 WDR48Q8TAF3 677 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 ZNF564Q8TBZ8 553 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-208ENST00000469802 OR1E3Q8WZA6 343 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 ZNF578Q96N58 590 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-208ENST00000469802 MCCC1Q96RQ3 725 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-208ENST00000469802 ASCL3Q9NQ33 180 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 PADI4Q9UM07 663 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 PCDHGC4Q9Y5F7 938 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 ENTPD2Q9Y5L3 495 aa16.35■□□□□ 0.21
COL9A3-208ENST00000469802 CACNB4O00305 520 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-208ENST00000469802 NTN3O00634 580 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-208ENST00000469802 TNFRSF10CO14798 259 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 RRP8O43159 456 aaKnown RBP16.34■□□□□ 0.21
COL9A3-208ENST00000469802 HEXIM1O94992 359 aaKnown RBP16.34■□□□□ 0.21
COL9A3-208ENST00000469802 LHCGRP22888 699 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 VIPR1P32241 457 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 MAXP61244 160 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 GALNT2Q10471 571 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 MMRN1Q13201 1228 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 DPYSL3Q14195 570 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 KRT81Q14533 505 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 MARC1Q5VT66 337 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 NCBP2-AS2Q69YL0 99 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 ALG1LQ6GMV1 187 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 CRTC1Q6UUV9 634 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 LRRC69Q6ZNQ3 347 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 GKN2Q86XP6 184 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 CPNE8Q86YQ8 564 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 LRRC49Q8IUZ0 686 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 BBS5Q8N3I7 341 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 OR56A4Q8NGH8 313 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 BBC3Q96PG8 261 aaPredicted RBP16.34■□□□□ 0.21
COL9A3-208ENST00000469802 CCDC3Q9BQI4 270 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 LGR4Q9BXB1 951 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 XPO4Q9C0E2 1151 aaKnown RBP16.34■□□□□ 0.21
COL9A3-208ENST00000469802 PRORYQ9H606 182 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 UNC13CQ8NB66 2214 aa16.34■□□□□ 0.21
COL9A3-208ENST00000469802 BAHCC1Q9P281 2608 aa16.33■□□□□ 0.21
COL9A3-208ENST00000469802 NPIPB15A6NHN6 443 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 A8MX80 341 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PSMD11O00231 422 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PGLSO95336 258 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 MYCLP1P12525 358 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 CTSEP14091 401 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 KELP23276 732 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 GARSP41250 739 aaKnown RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PCBP4P57723 403 aaKnown RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 ERVPABLB-1P60509 514 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 TLE3Q04726 772 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 ACOX1Q15067 660 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PAFAH1B3Q15102 231 aaKnown RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 TCEA2Q15560 299 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 NFKBIBQ15653 356 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 HADHQ16836 314 aaKnown RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 ASTE1Q2TB18 679 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PNCKQ6P2M8 343 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 RD3Q7Z3Z2 195 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PAF1Q8N7H5 531 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 GPR156Q8NFN8 814 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 SCG3Q8WXD2 468 aaKnown RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 MAML1Q92585 1016 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 FATE1Q969F0 183 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 FAF2Q96CS3 445 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 NUS1Q96E22 293 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 ATXN7L3BQ96GX2 97 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 DNAJC7Q99615 494 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 ZNF670Q9BS34 389 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 WDR26Q9H7D7 661 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 MRPL40Q9NQ50 206 aaKnown RBP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 KCTD5Q9NXV2 234 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 SIRPGQ9P1W8 387 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 UVRAGQ9P2Y5 699 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 RABGEF1Q9UJ41 708 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PHTF1Q9UMS5 762 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 GPR34Q9UPC5 381 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 DOLKQ9UPQ8 538 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 PPIL1Q9Y3C6 166 aa16.33■□□□□ 0.2
COL9A3-208ENST00000469802 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.33■□□□□ 0.2
COL9A3-208ENST00000469802 FZD6O60353 706 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PROSCO94903 275 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 TNFP01375 233 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 PTMSP20962 102 aa16.32■□□□□ 0.2
COL9A3-208ENST00000469802 TAS2R40P59535 323 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms