RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 DOLKQ9UPQ8 538 aa19.15■□□□□ 0.66
COL7A1-207ENST00000467985 SHROOM3Q8TF72 1996 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 TTC24A2A3L6 582 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 CPED1A4D0V7 1026 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 EME2A4GXA9 379 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 YY2O15391 372 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 MFSD11O43934 449 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 CYP2A6P11509 494 aaPredicted RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 MYF5P13349 255 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 VIPR1P32241 457 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 GJC1P36383 396 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 GARSP41250 739 aaKnown RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 C1orf61Q13536 156 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 ACOX1Q15067 660 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 IFI16Q16666 785 aaKnown RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 ALG11Q2TAA5 492 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 NCBP2-AS2Q69YL0 99 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 ESRP1Q6NXG1 681 aaKnown RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 SARM1Q6SZW1 724 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 PCDH19Q8TAB3 1148 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 POLR1EQ9GZS1 481 aaKnown RBP19.14■□□□□ 0.65
COL7A1-207ENST00000467985 CLPBQ9H078 707 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 LHX6Q9UPM6 363 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 DGKBQ9Y6T7 804 aa19.14■□□□□ 0.65
COL7A1-207ENST00000467985 PDE2AO00408 941 aaPredicted RBP19.13■□□□□ 0.65
COL7A1-207ENST00000467985 TNFRSF10CO14798 259 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 MATN3O15232 486 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 MFAP3LO75121 409 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 TNFP01375 233 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 MX2P20592 715 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 CCNCP24863 283 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 TRIM23P36406 574 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 ARHGAP25P42331 645 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 MAXP61244 160 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 GSE1Q14687 1217 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 ATP13A4Q4VNC1 1196 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 ZFYVE27Q5T4F4 411 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 ARMC12Q5T9G4 340 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 EFL1Q7Z2Z2 1120 aaKnown RBP19.13■□□□□ 0.65
COL7A1-207ENST00000467985 GKN2Q86XP6 184 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 CNGA4Q8IV77 575 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 NDUFAF2Q8N183 169 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 PLA2G15Q8NCC3 412 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 OR56A4Q8NGH8 313 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 WDR48Q8TAF3 677 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 MAML1Q92585 1016 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 TSACCQ96A04 125 aaPredicted RBP19.13■□□□□ 0.65
COL7A1-207ENST00000467985 GRAMD1AQ96CP6 724 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 FAF2Q96CS3 445 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 SCRN2Q96FV2 425 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 COQ10AQ96MF6 247 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 TSGA13Q96PP4 275 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 WDR26Q9H7D7 661 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 GRPEL1Q9HAV7 217 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 NT5MQ9NPB1 228 aa19.13■□□□□ 0.65
COL7A1-207ENST00000467985 A0A087WV48 116 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 A8MX80 341 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 ZNF487B1APH4 448 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 PSMD11O00231 422 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 HEXIM1O94992 359 aaKnown RBP19.12■□□□□ 0.65
COL7A1-207ENST00000467985 PGLSO95336 258 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 TAS2R40P59535 323 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 TRAF2Q12933 501 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 PNCKQ6P2M8 343 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 GUSBP11Q6P575 273 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 USP45Q70EL2 814 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 RD3Q7Z3Z2 195 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 RHOT2Q8IXI1 618 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 SLC35F3Q8IY50 421 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 ARL10Q8N8L6 244 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 SLC35G2Q8TBE7 412 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 FUBP1Q96AE4 644 aaKnown RBP19.12■□□□□ 0.65
COL7A1-207ENST00000467985 NUS1Q96E22 293 aa19.12■□□□□ 0.65
COL7A1-207ENST00000467985 MCCC1Q96RQ3 725 aaPredicted RBP19.12■□□□□ 0.65
COL7A1-207ENST00000467985 NHEJ1Q9H9Q4 299 aaPredicted RBP19.12■□□□□ 0.65
COL7A1-207ENST00000467985 TCEA3O75764 348 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 GM2AP17900 193 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 CA4P22748 312 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 ITKQ08881 620 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 ARHGEF7Q14155 803 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 MESDQ14696 234 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 CNGA3Q16281 694 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 ALG1LQ6GMV1 187 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 VSIG1Q86XK7 387 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 CPNE8Q86YQ8 564 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 ZNF830Q96NB3 372 aaPredicted RBP19.11■□□□□ 0.65
COL7A1-207ENST00000467985 RBM15Q96T37 977 aaKnown RBP eCLIP19.11■□□□□ 0.65
COL7A1-207ENST00000467985 SEMA3CQ99985 751 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 PADI4Q9UM07 663 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 PPIL1Q9Y3C6 166 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 RAI2Q9Y5P3 530 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 LRP4O75096 1905 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 LOC400499M0QZD8 3231 aa19.11■□□□□ 0.65
COL7A1-207ENST00000467985 ASXL3Q9C0F0 2248 aa19.1■□□□□ 0.65
COL7A1-207ENST00000467985 ADAMTS20P59510 1910 aa19.1■□□□□ 0.65
COL7A1-207ENST00000467985 CSO75390 466 aaKnown RBP19.1■□□□□ 0.65
COL7A1-207ENST00000467985 MTA2O94776 668 aa19.1■□□□□ 0.65
COL7A1-207ENST00000467985 CCNB1P14635 433 aa19.1■□□□□ 0.65
COL7A1-207ENST00000467985 KDELR1P24390 212 aa19.1■□□□□ 0.65
COL7A1-207ENST00000467985 ACTN2P35609 894 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms