RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 FAM210AQ96ND0 272 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 PKMYT1Q99640 499 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 RTP3Q9BQQ7 232 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 CXorf21Q9HAI6 301 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 STAP1Q9ULZ2 295 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 USP22Q9UPT9 525 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 NEU3Q9UQ49 428 aa12.48□□□□□ -0.41
HDAC4-208ENST00000463007 TDRD15B5MCY1 1934 aaKnown RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 NCF1BA6NI72 391 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 NCF1CA8MVU1 366 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 H3BMM5 538 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 NCF1P14598 390 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CDK9P50750 372 aaKnown RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CD300CQ08708 224 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CDH17Q12864 832 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 FSCN1Q16658 493 aaKnown RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 C2orf69Q8N8R5 385 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 BPIFB6Q8NFQ5 453 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 SH3RF2Q8TEC5 729 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 STYXQ8WUJ0 223 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 VPS33AQ96AX1 596 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 C1QTNF1Q9BXJ1 281 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 ADNPQ9H2P0 1102 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 MRPL46Q9H2W6 279 aaKnown RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CSNK1G1Q9HCP0 422 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 MIOSQ9NXC5 875 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 DGKBQ9Y6T7 804 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 EI24O14681 340 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CLOCKO15516 846 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 NRP2O60462 931 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 ZBTB11O95625 1053 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 MYL3P08590 195 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 PIM1P11309 404 aaPredicted RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CYP2B6P20813 491 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 BDNFP23560 247 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 AIF1P55008 147 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 DAOAP59103 153 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 STX1BP61266 288 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 MRPS6P82932 125 aaKnown RBP12.47□□□□□ -0.41
HDAC4-208ENST00000463007 TAF2Q6P1X5 1199 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CD300LGQ6UXG3 332 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 KLHDC8BQ8IXV7 354 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 CNTD1Q8N815 330 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 ESAMQ96AP7 390 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 HBEGFQ99075 208 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 GPR22Q99680 433 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 BRD8Q9H0E9 1235 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 UNC93B1Q9H1C4 597 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 IGSF9Q9P2J2 1179 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 ADAM28Q9UKQ2 775 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF510Q9Y2H8 683 aa12.47□□□□□ -0.41
HDAC4-208ENST00000463007 TSPAN3O60637 253 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 PIRTP0C851 137 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 PIGFQ07326 219 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 PTPRCAPQ14761 206 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 CYP51A1Q16850 503 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 IL22Q9GZX6 179 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 TSPYL2Q9H2G4 693 aaPredicted RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 WDCPQ9H6R7 721 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 LTB4R2Q9NPC1 389 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 TTC36A6NLP5 189 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 TRPC5OSA6NMA1 111 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 LRIG2O94898 1065 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 CHRNA1P02708 482 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 LINC00032P0C843 101 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 MAP4P27816 1152 aaKnown RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 HCAR3P49019 387 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 NSUN2Q08J23 767 aaKnown RBP eCLIP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 ITGADQ13349 1161 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 RABL3Q5HYI8 236 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 GPR158Q5T848 1215 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 RETREG3Q86VR2 466 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 RNF168Q8IYW5 571 aaPredicted RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 NUDT8Q8WV74 236 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 MCMBPQ9BTE3 642 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 OSBPL6Q9BZF3 934 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 CASS4Q9NQ75 786 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 WARS2Q9UGM6 360 aaKnown RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 MID2Q9UJV3 735 aa12.46□□□□□ -0.41
HDAC4-208ENST00000463007 RBMX2Q9Y388 322 aaKnown RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 MAGED1Q9Y5V3 778 aaPredicted RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 GOLGA4Q13439 2230 aaKnown RBP12.46□□□□□ -0.41
HDAC4-208ENST00000463007 ZNF189O75820 626 aaPredicted RBP12.46□□□□□ -0.42
HDAC4-208ENST00000463007 UGT1A1P22309 533 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 UGT1A4P22310 534 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 UGT1A3P35503 534 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 UGT1A5P35504 534 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 RXRGP48443 463 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 AARS2Q5JTZ9 985 aaKnown RBP12.46□□□□□ -0.42
HDAC4-208ENST00000463007 KCTD11Q693B1 232 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 GRAMD4Q6IC98 578 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 MRPL10Q7Z7H8 261 aaKnown RBP12.46□□□□□ -0.42
HDAC4-208ENST00000463007 TMEM86AQ8N2M4 240 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 HASPINQ8TF76 798 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 ANKRD49Q8WVL7 239 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 PCED1BQ96HM7 432 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 SENP8Q96LD8 212 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 ZNF597Q96LX8 424 aa12.46□□□□□ -0.42
HDAC4-208ENST00000463007 TMEM74Q96NL1 305 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms