RNA–Protein interactions for RNA: ENST00000461874.1

VARS-220, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 845 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-220ENST00000461874 KCTD16Q68DU8 428 aa19■□□□□ 0.63
VARS-220ENST00000461874 ESRP1Q6NXG1 681 aaKnown RBP19■□□□□ 0.63
VARS-220ENST00000461874 PDZD3Q86UT5 571 aa19■□□□□ 0.63
VARS-220ENST00000461874 CBARPQ8N350 705 aaPredicted RBP19■□□□□ 0.63
VARS-220ENST00000461874 TEX26Q8N6G2 289 aa19■□□□□ 0.63
VARS-220ENST00000461874 KCTD6Q8NC69 237 aa19■□□□□ 0.63
VARS-220ENST00000461874 PCDH19Q8TAB3 1148 aa19■□□□□ 0.63
VARS-220ENST00000461874 SNIP1Q8TAD8 396 aaKnown RBP19■□□□□ 0.63
VARS-220ENST00000461874 SCG3Q8WXD2 468 aaKnown RBP19■□□□□ 0.63
VARS-220ENST00000461874 CTNNBL1Q8WYA6 563 aaPredicted RBP19■□□□□ 0.63
VARS-220ENST00000461874 NAT6Q93015 286 aa19■□□□□ 0.63
VARS-220ENST00000461874 PADI4Q9UM07 663 aa19■□□□□ 0.63
VARS-220ENST00000461874 PHTF1Q9UMS5 762 aa19■□□□□ 0.63
VARS-220ENST00000461874 DOLKQ9UPQ8 538 aa19■□□□□ 0.63
VARS-220ENST00000461874 TMEM202A6NGA9 273 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 CACNB4O00305 520 aaPredicted RBP18.99■□□□□ 0.63
VARS-220ENST00000461874 MFSD11O43934 449 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 TNFP01375 233 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 VIPR1P32241 457 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 ACTN2P35609 894 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 GJC1P36383 396 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 GARSP41250 739 aaKnown RBP18.99■□□□□ 0.63
VARS-220ENST00000461874 TAS2R40P59535 323 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 GALNT2Q10471 571 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 PAFAH1B3Q15102 231 aaKnown RBP18.99■□□□□ 0.63
VARS-220ENST00000461874 PDK2Q15119 407 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 CNGA3Q16281 694 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 ISXQ2M1V0 245 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 ANKRD20A8PQ5CZ79 823 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 NCBP2-AS2Q69YL0 99 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 PNCKQ6P2M8 343 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 GKN2Q86XP6 184 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 ARL10Q8N8L6 244 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 OR56A4Q8NGH8 313 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 OR1E3Q8WZA6 343 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 FGF11Q92914 225 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 PDXPQ96GD0 296 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 RBM15Q96T37 977 aaKnown RBP eCLIP18.99■□□□□ 0.63
VARS-220ENST00000461874 ZNF670Q9BS34 389 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 NT5MQ9NPB1 228 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 LCMT1Q9UIC8 334 aa18.99■□□□□ 0.63
VARS-220ENST00000461874 RP1P56715 2156 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 SSU72P8A0A1W2PR75 194 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 TNFRSF10CO14798 259 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 USP12O75317 370 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 HEXIM1O94992 359 aaKnown RBP18.98■□□□□ 0.63
VARS-220ENST00000461874 PGLSO95336 258 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 KRT7P08729 469 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 KELP23276 732 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 NFKBIAP25963 317 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 TCEA2Q15560 299 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 TBC1D25Q3MII6 688 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 ARMC12Q5T9G4 340 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 CRTC1Q6UUV9 634 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 MAP7D3Q8IWC1 876 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 PELI3Q8N2H9 469 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 MAML1Q92585 1016 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 SCRN2Q96FV2 425 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 WDR26Q9H7D7 661 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 FGF22Q9HCT0 170 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 ZNHIT6Q9NWK9 470 aaKnown RBP18.98■□□□□ 0.63
VARS-220ENST00000461874 GULP1Q9UBP9 304 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 GPR34Q9UPC5 381 aa18.98■□□□□ 0.63
VARS-220ENST00000461874 TCEA3O75764 348 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 MPOP05164 745 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 TMEM253P0C7T8 217 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 CYP2A6P11509 494 aaPredicted RBP18.97■□□□□ 0.63
VARS-220ENST00000461874 LHCGRP22888 699 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 ITPKBP27987 946 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 MAN1A1P33908 653 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 ABCG1P45844 678 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 LSSP48449 732 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 RBM44Q6ZP01 1051 aaKnown RBP18.97■□□□□ 0.63
VARS-220ENST00000461874 HSD11B1LQ7Z5J1 315 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 VSTM4Q8IW00 320 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 KYQ8NBH2 561 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 PIH1D2Q8WWB5 315 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 FATE1Q969F0 183 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 GRAMD1AQ96CP6 724 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 FAF2Q96CS3 445 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 NUS1Q96E22 293 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 TSGA13Q96PP4 275 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 MCCC1Q96RQ3 725 aaPredicted RBP18.97■□□□□ 0.63
VARS-220ENST00000461874 SEMA3CQ99985 751 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 CCDC3Q9BQI4 270 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 LGR4Q9BXB1 951 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 DEF6Q9H4E7 631 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 KCTD5Q9NXV2 234 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 SIRPGQ9P1W8 387 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 PPIL1Q9Y3C6 166 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 RAI2Q9Y5P3 530 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 ANKRD36A6QL64 1941 aa18.97■□□□□ 0.63
VARS-220ENST00000461874 NPIPB15A6NHN6 443 aaPredicted RBP18.96■□□□□ 0.63
VARS-220ENST00000461874 PSMD11O00231 422 aa18.96■□□□□ 0.63
VARS-220ENST00000461874 PDE2AO00408 941 aaPredicted RBP18.96■□□□□ 0.63
VARS-220ENST00000461874 MATN3O15232 486 aa18.96■□□□□ 0.63
VARS-220ENST00000461874 RRP8O43159 456 aaKnown RBP18.96■□□□□ 0.63
VARS-220ENST00000461874 AKR1B10O60218 316 aa18.96■□□□□ 0.63
VARS-220ENST00000461874 DXOO77932 396 aaKnown RBP18.96■□□□□ 0.63
VARS-220ENST00000461874 CCNCP24863 283 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms