RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ZMPSTE24O75844 475 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 IL1BP01584 269 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 F11P03951 625 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 GJA8P48165 433 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 PPP3CCP48454 512 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 ARF5P84085 180 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 SEMG2Q02383 582 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 HSF5Q4G112 596 aaPredicted RBP13.69□□□□□ -0.22
CLK3-203ENST00000454830 SPDYAQ5MJ70 313 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 PPM1LQ5SGD2 360 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 SEL1L3Q68CR1 1132 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 CXorf57Q6NSI4 855 aaKnown RBP13.69□□□□□ -0.22
CLK3-203ENST00000454830 CHST9Q7L1S5 443 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 KLHDC8BQ8IXV7 354 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 KCNV2Q8TDN2 545 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 AGAP11Q8TF27 550 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 CEP295NLQ96MC4 621 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 THTPAQ9BU02 230 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 TNKS2Q9H2K2 1166 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 ASAH2Q9NR71 780 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 VPS51Q9UID3 782 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 TRAV19A0A0A6YYK7 116 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 EFCAB14O75071 495 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 SUPT7LO94864 414 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 S1PR4O95977 384 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 CDKN2DP55273 166 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 NSUN2Q08J23 767 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLK3-203ENST00000454830 ATG14Q6ZNE5 492 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 TMEM150AQ86TG1 271 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 STYXQ8WUJ0 223 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 UTP4Q969X6 686 aaKnown RBP13.69□□□□□ -0.22
CLK3-203ENST00000454830 RANBP9Q96S59 729 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 HCFC1R1Q9NWW0 138 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 NCKIPSDQ9NZQ3 722 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 TAGLN3Q9UI15 199 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 FKBPLQ9UIM3 349 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 PAPSS2O95340 614 aaPredicted RBP13.69□□□□□ -0.22
CLK3-203ENST00000454830 SERPINA6P08185 405 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 COL6A2P12110 1019 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 SERPINB5P36952 375 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 LEPRP48357 1165 aaKnown RBP13.69□□□□□ -0.22
CLK3-203ENST00000454830 CTC1Q2NKJ3 1217 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 SLC9B1Q4ZJI4 515 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 SH2D4BQ5SQS7 431 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 RETSATQ6NUM9 610 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 FBXO46Q6PJ61 603 aaPredicted RBP13.69□□□□□ -0.22
CLK3-203ENST00000454830 TRIM67Q6ZTA4 783 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 CAMK1DQ8IU85 385 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 APCDD1Q8J025 514 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 FAM13CQ8NE31 585 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 NAT14Q8WUY8 206 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 ANKRD49Q8WVL7 239 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 MARK4Q96L34 752 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 C1QTNF1Q9BXJ1 281 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 TCF7L2Q9NQB0 619 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 TAS2R1Q9NYW7 299 aa13.69□□□□□ -0.22
CLK3-203ENST00000454830 PLXNA3P51805 1871 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 DOCK6Q96HP0 2047 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 TMEM233B4DJY2 109 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 HNRNPCL1O60812 293 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 GLUD1P00367 558 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 CYBBP04839 570 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 RPL14P50914 215 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 FBXO48Q5FWF7 155 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 CCDC149Q6ZUS6 474 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 C2orf49Q9BVC5 232 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 CADM1Q9BY67 442 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 CXXC1Q9P0U4 656 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 ANKRD12Q6UB98 2062 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 MROH6A6NGR9 719 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 TLL1O43897 1013 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 ENTPD5O75356 428 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 H2AFYO75367 372 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 RFPL2O75678 378 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 EPOP01588 193 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 ALPIP09923 528 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 GFAPP14136 432 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 LPOP22079 712 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 WEE1P30291 646 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 ZXDBP98169 803 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 TRAF2Q12933 501 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 PEX6Q13608 980 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 ZRSR2Q15696 482 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 ACAD11Q709F0 780 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 ARHGAP24Q8N264 748 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 TXNDC5Q8NBS9 432 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 RDH11Q8TC12 318 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 FATE1Q969F0 183 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 TDRD1Q9BXT4 1180 aaKnown RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 NCF1BA6NI72 391 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 NCF1CA8MVU1 366 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 TMEM114B3SHH9 223 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 SIN3BO75182 1162 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 CTSAP10619 480 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 NCF1P14598 390 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 SYN1P17600 705 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 CHRM3P20309 590 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 ATP5F1P24539 256 aaPredicted RBP13.68□□□□□ -0.22
CLK3-203ENST00000454830 MC4RP32245 332 aa13.68□□□□□ -0.22
CLK3-203ENST00000454830 PRKAA1Q13131 559 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms