RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MAN2B1O00754 1011 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 NDC80O14777 642 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 MID1O15344 667 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 ATP8B1O43520 1251 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 CLDN7O95471 211 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 SLC4A1P02730 911 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 ALADP13716 330 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 HOXB2P14652 356 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 LHCGRP22888 699 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 CA5AP35218 305 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 DRD3P35462 400 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 MAPK8P45983 427 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 PSMD8P48556 350 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 ARSDP51689 593 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 RPS14P62263 151 aaKnown RBP11.02□□□□□ -0.65
SCN9A-205ENST00000454569 MRPS21P82921 87 aaKnown RBP11.02□□□□□ -0.65
SCN9A-205ENST00000454569 TMPRSS15P98073 1019 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 SATB1Q01826 763 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 PRKCQQ04759 706 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 RAD51Q06609 339 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 SEPT6Q14141 434 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 CASP8Q14790 479 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 SLMAPQ14BN4 828 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 UBXN2BQ14CS0 331 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 EFTUD2Q15029 972 aaKnown RBP eCLIP11.02□□□□□ -0.65
SCN9A-205ENST00000454569 UGP2Q16851 508 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 ANKRD20A4Q4UJ75 823 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 ZNF805Q5CZA5 627 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 PCID2Q5JVF3 399 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 CRTC1Q6UUV9 634 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 HDXQ7Z353 690 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 LYSMD3Q7Z3D4 306 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 TMEM135Q86UB9 458 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 AADATQ8N5Z0 425 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 TMIEQ8NEW7 156 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 OR8D1Q8WZ84 308 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 KIFC1Q9BW19 673 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 IL22Q9GZX6 179 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 RSPH9Q9H1X1 276 aaPredicted RBP11.02□□□□□ -0.65
SCN9A-205ENST00000454569 PABPC3Q9H361 631 aaKnown RBP11.02□□□□□ -0.65
SCN9A-205ENST00000454569 SUDS3Q9H7L9 328 aaPredicted RBP11.02□□□□□ -0.65
SCN9A-205ENST00000454569 BPIFA1Q9NP55 256 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 HAUS2Q9NVX0 235 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 B4GALT6Q9UBX8 382 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 SOX13Q9UN79 622 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 PPIL1Q9Y3C6 166 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 TCAF1Q9Y4C2 921 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 NFS1Q9Y697 457 aa11.02□□□□□ -0.65
SCN9A-205ENST00000454569 CXorf49A8MYA2 514 aaPredicted RBP11.01□□□□□ -0.65
SCN9A-205ENST00000454569 GOLGA8KD6RF30 607 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 GOLGA8TH3BQL2 631 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 UGT1A9O60656 530 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 PRSS56P0CW18 603 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 ADRA1DP25100 572 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 ARNTP27540 789 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 EPHB1P54762 984 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 ZXDAP98168 799 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 CNTN1Q12860 1018 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 CNGA3Q16281 694 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 DNAJC21Q5F1R6 531 aaKnown RBP11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TMEM31Q5JXX7 168 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TSTD2Q5T7W7 516 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 STEAP4Q687X5 459 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TRIM67Q6ZTA4 783 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 C3orf62Q6ZUJ4 267 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TTC7BQ86TV6 843 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 PALM2Q8IXS6 379 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 IQCKQ8N0W5 287 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 OR13J1Q8NGT2 312 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 FBF1Q8TES7 1133 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TTC28Q96AY4 2481 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 ZNF669Q96BR6 464 aaPredicted RBP11.01□□□□□ -0.65
SCN9A-205ENST00000454569 SCRN2Q96FV2 425 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 MSANTD3Q96H12 275 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 DNAJC1Q96KC8 554 aaKnown RBP11.01□□□□□ -0.65
SCN9A-205ENST00000454569 ADGRE3Q9BY15 652 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 PHACTR1Q9C0D0 580 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 VPS37BQ9H9H4 285 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TBC1D17Q9HA65 648 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 UGT1A7Q9HAW7 530 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 UGT1A10Q9HAW8 530 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 UGT1A8Q9HAW9 530 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 PCDH12Q9NPG4 1184 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 TREX1Q9NSU2 369 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.01□□□□□ -0.65
SCN9A-205ENST00000454569 MMP17Q9ULZ9 603 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 PHTF1Q9UMS5 762 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 ZNF711Q9Y462 761 aa11.01□□□□□ -0.65
SCN9A-205ENST00000454569 USP34Q70CQ2 3546 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 GON4LQ3T8J9 2241 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 FAM237BA0A1B0GVD1 139 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 OR51F1A6NGY5 319 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 CAPN8A6NHC0 703 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 PI15O43692 258 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 PRNPP04156 253 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 GM2AP17900 193 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 PGAM1P18669 254 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 GCAP28676 217 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 P2RY2P41231 377 aa11□□□□□ -0.65
SCN9A-205ENST00000454569 GRIA4P48058 902 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms