RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 HOXC4P09017 264 aaPredicted RBP20.8■□□□□ 0.92
SDC1-205ENST00000447124 H2AFZP0C0S5 128 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 CTSEP14091 401 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 PTMSP20962 102 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 SERPINB6P35237 376 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 GJC1P36383 396 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 KIAA1024LP59773 190 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 GALNT2Q10471 571 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 ACOX1Q15067 660 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 ELOCQ15369 112 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 CNGA3Q16281 694 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 ISXQ2M1V0 245 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 ANKRD20A8PQ5CZ79 823 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 PNCKQ6P2M8 343 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 LVRNQ6Q4G3 990 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 H2AFVQ71UI9 128 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 PQLC3Q8N755 202 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 PIH1D2Q8WWB5 315 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 FGF11Q92914 225 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 PDXPQ96GD0 296 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 SMIM14Q96QK8 99 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 DNAJC7Q99615 494 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 CHP1Q99653 195 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 FGF22Q9HCT0 170 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 NT5MQ9NPB1 228 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 UVRAGQ9P2Y5 699 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 GULP1Q9UBP9 304 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 PHTF1Q9UMS5 762 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 DGKBQ9Y6T7 804 aa20.8■□□□□ 0.92
SDC1-205ENST00000447124 A0A0U1RQS6 177 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 A0A1W2PQ67 120 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 HEXIM1O94992 359 aaKnown RBP20.79■□□□□ 0.92
SDC1-205ENST00000447124 PGLSO95336 258 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 CPP00450 1065 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 MPOP05164 745 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 PDHA1P08559 390 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 LHCGRP22888 699 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 VIPR1P32241 457 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 GARSP41250 739 aaKnown RBP20.79■□□□□ 0.92
SDC1-205ENST00000447124 RPIAP49247 311 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 SKOR2Q2VWA4 1001 aaPredicted RBP20.79■□□□□ 0.92
SDC1-205ENST00000447124 SPECC1LQ69YQ0 1117 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 ESRP1Q6NXG1 681 aaKnown RBP20.79■□□□□ 0.92
SDC1-205ENST00000447124 HSD11B1LQ7Z5J1 315 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 LRRC49Q8IUZ0 686 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 BBS5Q8N3I7 341 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 KCTD6Q8NC69 237 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 OR56A4Q8NGH8 313 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 SNIP1Q8TAD8 396 aaKnown RBP20.79■□□□□ 0.92
SDC1-205ENST00000447124 NSMCE1Q8WV22 266 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 MAML1Q92585 1016 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 GLMNQ92990 594 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 RBM15Q96T37 977 aaKnown RBP eCLIP20.79■□□□□ 0.92
SDC1-205ENST00000447124 SEMA3CQ99985 751 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 SIRPGQ9P1W8 387 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 RABGEF1Q9UJ41 708 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 DOLKQ9UPQ8 538 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 PPIL1Q9Y3C6 166 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 SHROOM3Q8TF72 1996 aa20.79■□□□□ 0.92
SDC1-205ENST00000447124 CACNB4O00305 520 aaPredicted RBP20.78■□□□□ 0.92
SDC1-205ENST00000447124 FZD6O60353 706 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 ALPIP09923 528 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 SLC10A2Q12908 348 aaPredicted RBP20.78■□□□□ 0.92
SDC1-205ENST00000447124 PDK2Q15119 407 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 TBC1D25Q3MII6 688 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 RALGPS1Q5JS13 557 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 RFLNAQ6ZTI6 216 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 TSPAN33Q86UF1 283 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 SFTPA2Q8IWL1 248 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 KYQ8NBH2 561 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 ATL2Q8NHH9 583 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 TPCN2Q8NHX9 752 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 RAPGEF5Q92565 580 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 FAF2Q96CS3 445 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 SCRN2Q96FV2 425 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 CCDC3Q9BQI4 270 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 GPR34Q9UPC5 381 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 ENTPD2Q9Y5L3 495 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 RAI2Q9Y5P3 530 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 PTPRQQ9UMZ3 2332 aa20.78■□□□□ 0.92
SDC1-205ENST00000447124 COL27A1Q8IZC6 1860 aaPredicted RBP20.77■□□□□ 0.92
SDC1-205ENST00000447124 SSU72P8A0A1W2PR75 194 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 NPIPB15A6NHN6 443 aaPredicted RBP20.77■□□□□ 0.92
SDC1-205ENST00000447124 TNFRSF10CO14798 259 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 MATN3O15232 486 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 FUCA1P04066 466 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 TPM3P06753 285 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 CTPS1P17812 591 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 ETV3P41162 512 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 LSSP48449 732 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 GBE1Q04446 702 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 SOWAHCQ53LP3 525 aaPredicted RBP20.77■□□□□ 0.92
SDC1-205ENST00000447124 ARMC12Q5T9G4 340 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 DENND2CQ68D51 928 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 GKN2Q86XP6 184 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 VSTM4Q8IW00 320 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 SDR16C5Q8N3Y7 309 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 ARL10Q8N8L6 244 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 CCL4L1Q8NHW4 92 aa20.77■□□□□ 0.92
SDC1-205ENST00000447124 SCG3Q8WXD2 468 aaKnown RBP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms