RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 COMMD3-BMI1R4GMX3 469 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 A0A0J9YYE9 177 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 ANGPT2O15123 496 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 NOBOXO60393 691 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 DARSP14868 501 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 RPS12P25398 132 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 NFKBIAP25963 317 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 CNTFP26441 200 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PCYT1AP49585 367 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TRAF2Q12933 501 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 MAPK11Q15759 364 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 ALFQ53S48 1182 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 SH3D19Q5HYK7 790 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PERM1Q5SV97 790 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 PKN3Q6P5Z2 889 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 TMEM207Q6UWW9 146 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 STRADAQ7RTN6 431 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 GALNT10Q86SR1 603 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 ACMSDQ8TDX5 336 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 AKTIPQ9H8T0 292 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 RGS18Q9NS28 235 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 DNAAF2Q9NVR5 837 aaKnown RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 GALPQ9UBC7 116 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 HCSTQ9UBK5 93 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 UXTQ9UBK9 157 aaPredicted RBP8.68□□□□□ -1.02
USP40-203ENST00000427112 CROTQ9UKG9 612 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 KIAA1257Q9ULG3 409 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 LOXHD1Q8IVV2 1947 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 SSC5DA1L4H1 1573 aa8.68□□□□□ -1.02
USP40-203ENST00000427112 MYADML2A6NDP7 307 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 FZD9O00144 591 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 MPOP05164 745 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ALDOCP09972 364 aaKnown RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 DGKQP52824 942 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 MTPNP58546 118 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 RBBP7Q16576 425 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 DUS1LQ6P1R4 473 aaKnown RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 PGAM4Q8N0Y7 254 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 TMEM151AQ8N4L1 468 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 CDYL2Q8N8U2 506 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ATAD1Q8NBU5 361 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 FBXO30Q8TB52 745 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 GFM2Q969S9 779 aaKnown RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 SLCO4A1Q96BD0 722 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 THAP11Q96EK4 314 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 IL22Q9GZX6 179 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 CASS4Q9NQ75 786 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 FBXW11Q9UKB1 542 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SZT2Q5T011 3432 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 NUMA1Q14980 2115 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SDK1Q7Z5N4 2213 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 A0A0J9YVX5 310 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SNAP29O95721 258 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 IRF1P10914 325 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 CYP4B1P13584 511 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 CASP9P55211 416 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 PRKCQQ04759 706 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SV2CQ496J9 727 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 FGD3Q5JSP0 725 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SHCBP1Q8NEM2 672 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 CENPIQ92674 756 aaPredicted RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 PTERQ96BW5 349 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ZNF560Q96MR9 790 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 MYOCQ99972 504 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 C1QTNF1Q9BXJ1 281 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SP110Q9HB58 689 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 NMUR1Q9HB89 426 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SMOXQ9NWM0 555 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 NOD1Q9Y239 953 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 C1orf232A0A0U1RR37 186 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 A0A1W2PQH9 124 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 KLHL33A6NCF5 533 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ASB14A6NK59 587 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 TRIM38O00635 465 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 GAS2O43903 313 aaKnown RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 DAB1O75553 588 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 CAPN15O75808 1086 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ABCB1P08183 1280 aaPredicted RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 SNRPB2P08579 225 aaKnown RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 ZNF182P17025 639 aaPredicted RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 ACVRL1P37023 503 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ACADSBP45954 432 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 GLUD2P49448 558 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SH3BP2P78314 561 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 TRIM25Q14258 630 aaKnown RBP8.67□□□□□ -1.02
USP40-203ENST00000427112 IHHQ14623 411 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 MYBPC3Q14896 1274 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SLC39A12Q504Y0 691 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 HECTD2Q5U5R9 776 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 MAMDC4Q6UXC1 1216 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 SLC22A15Q8IZD6 547 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 STYXQ8WUJ0 223 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 HMCESQ96FZ2 354 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 GPR22Q99680 433 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 MIR1-1HGQ9H1L0 117 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 GLOD4Q9HC38 313 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 RRN3Q9NYV6 651 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 ATXN10Q9UBB4 475 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 UTS2RQ9UKP6 389 aa8.67□□□□□ -1.02
USP40-203ENST00000427112 KANSL1LA0AUZ9 987 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms