RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 AXIN1O15169 862 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 GSTA2P09210 222 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 ATXN1LP0C7T5 689 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 CHRNA4P43681 627 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 RPS21P63220 83 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 DHX9Q08211 1270 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 FZD5Q13467 585 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 ACOX1Q15067 660 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 FAM182AQ5T1J6 154 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 KIAA1161Q6NSJ0 714 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 DPPA4Q7L190 304 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 BMP8AQ7Z5Y6 402 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 FAM124AQ86V42 546 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 C1orf210Q8IVY1 113 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 OTUD6BQ8N6M0 293 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 CDKL2Q92772 493 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 ARRDC3Q96B67 414 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 LYSMD1Q96S90 227 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 EBNA1BP2Q99848 306 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 C19orf43Q9BQ61 176 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 GORASP1Q9BQQ3 440 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 CCDC77Q9BR77 488 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 MRM3Q9HC36 420 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 PPANQ9NQ55 473 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 ITM2CQ9NQX7 267 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 PIH1D1Q9NWS0 290 aaKnown RBP10.12□□□□□ -0.79
CD44-207ENST00000425428 B4GALT6Q9UBX8 382 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 EBF1Q9UH73 591 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 APPL1Q9UKG1 709 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 FAM169AQ9Y6X4 670 aa10.12□□□□□ -0.79
CD44-207ENST00000425428 CCDC163A0A0D9SF12 145 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 FAM237BA0A1B0GVD1 139 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 A8MX80 341 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TM7SF2O76062 418 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 PAPSS2O95340 614 aaPredicted RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 PRLP01236 227 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 PYGLP06737 847 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 ALPIP09923 528 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CD6P30203 668 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 HMGCLP35914 325 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 NUDT1P36639 197 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 MAGEA4P43358 317 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TPMTP51580 245 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 PTPN5P54829 565 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 THOC5Q13769 683 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 ZNF284Q2VY69 593 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SPANXN3Q5MJ09 141 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CERCAMQ5T4B2 595 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CWF19L1Q69YN2 538 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 PKN3Q6P5Z2 889 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TRMT10CQ7L0Y3 403 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 CAND1Q86VP6 1230 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 FBXO36Q8NEA4 188 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 OR2T34Q8NGX1 318 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CALML6Q8TD86 181 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CFAP36Q96G28 342 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 MCCC1Q96RQ3 725 aaPredicted RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 FAM126AQ9BYI3 521 aaPredicted RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 NEUROG2Q9H2A3 272 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 VPS37BQ9H9H4 285 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 ZDHHC18Q9NUE0 388 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TXNDC16Q9P2K2 825 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SOX13Q9UN79 622 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CYP8B1Q9UNU6 501 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TCAF1Q9Y4C2 921 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 IKBKGQ9Y6K9 419 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SLC30A1Q9Y6M5 507 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 RPS6KL1Q9Y6S9 549 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TECTAO75443 2155 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 UNC80Q8N2C7 3258 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CCDC151A5D8V7 595 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 PRR23AA6NEV1 266 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 F8W8V4 182 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 WNT9AO14904 365 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CTIFO43310 598 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 PLRG1O43660 514 aaKnown RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 AVILO75366 819 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 USP1O94782 785 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SEMA4FO95754 770 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 PDGFBP01127 241 aaPredicted RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 PIRTP0C851 137 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TSHRP16473 764 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 MMP12P39900 470 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 ELK3P41970 407 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 GRIA1P42261 906 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 NUBP1P53384 320 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 VSNL1P62760 191 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 OLIG2Q13516 323 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 TMEM52BQ4KMG9 183 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 FNBP1LQ5T0N5 605 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 LRRC66Q68CR7 880 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 ZDHHC24Q6UX98 284 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 LYSMD3Q7Z3D4 306 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SDCCAG8Q86SQ7 713 aaPredicted RBP10.11□□□□□ -0.79
CD44-207ENST00000425428 ANKMY2Q8IV38 441 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 NRSN1Q8IZ57 195 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 CNPY4Q8N129 248 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 AADATQ8N5Z0 425 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 DTWD2Q8NBA8 298 aa10.11□□□□□ -0.79
CD44-207ENST00000425428 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms