RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 CNGA3Q16281 694 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 ANKRD22Q5VYY1 191 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 SEL1L3Q68CR1 1132 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 PMS2CLQ68D20 193 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 KIAA0895LQ68EN5 471 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 C8orf74Q6P047 294 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 CRTC1Q6UUV9 634 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 CEP68Q76N32 757 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 ASCL5Q7RTU5 278 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 TSPAN33Q86UF1 283 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 HORMAD1Q86X24 394 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 CXorf40AQ8TE69 158 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 WRAP53Q9BUR4 548 aaKnown RBP17.04■□□□□ 0.32
COL7A1-202ENST00000422991 DUSP15Q9H1R2 295 aaPredicted RBP17.04■□□□□ 0.32
COL7A1-202ENST00000422991 MAGEE1Q9HCI5 957 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 ZFR2Q9UPR6 939 aaKnown RBP17.04■□□□□ 0.32
COL7A1-202ENST00000422991 SPO11Q9Y5K1 396 aa17.04■□□□□ 0.32
COL7A1-202ENST00000422991 DOCK9Q9BZ29 2069 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 A0A1W2PQU0 124 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 TCRBV7S3A2A0A539 114 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 A8MX80 341 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 DNALI1O14645 258 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-202ENST00000422991 LATO43561 262 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 TMEM63AO94886 807 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 GRIA1P42261 906 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 LIG3P49916 1009 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 TERF1P54274 439 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 RPS21P63220 83 aaKnown RBP17.03■□□□□ 0.32
COL7A1-202ENST00000422991 CDKN3Q16667 212 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 ZNF284Q2VY69 593 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 PLK5Q496M5 336 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 SPDYCQ5MJ68 293 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 RNASEH2BQ5TBB1 312 aaKnown RBP17.03■□□□□ 0.32
COL7A1-202ENST00000422991 LRRC66Q68CR7 880 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 LIPIQ6XZB0 460 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 PPP1R21Q6ZMI0 780 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 LPCAT2Q7L5N7 544 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 SLC41A1Q8IVJ1 513 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 TMEFF1Q8IYR6 380 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 ZC3H10Q96K80 434 aaKnown RBP17.03■□□□□ 0.32
COL7A1-202ENST00000422991 SRPK1Q96SB4 655 aaKnown RBP17.03■□□□□ 0.32
COL7A1-202ENST00000422991 ERP44Q9BS26 406 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 CASS4Q9NQ75 786 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.03■□□□□ 0.32
COL7A1-202ENST00000422991 ZNF711Q9Y462 761 aa17.03■□□□□ 0.32
COL7A1-202ENST00000422991 ZNF106Q9H2Y7 1883 aaKnown RBP17.02■□□□□ 0.32
COL7A1-202ENST00000422991 A0A0U1RQS6 177 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 C1orf232A0A0U1RR37 186 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 IGLON5A6NGN9 336 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 METTL12A8MUP2 240 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 MMP20O60882 483 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 FSBPO95073 299 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 ELFN1P0C7U0 828 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 C6P13671 934 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 ZNF30P17039 623 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 RPL21P46778 160 aaKnown RBP17.02■□□□□ 0.32
COL7A1-202ENST00000422991 CDH17Q12864 832 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 MSLNQ13421 630 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-202ENST00000422991 SIM2Q14190 667 aaPredicted RBP17.02■□□□□ 0.32
COL7A1-202ENST00000422991 IZUMO3Q5VZ72 239 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 ZNF534Q76KX8 674 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 LYSMD3Q7Z3D4 306 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 PPIL6Q8IXY8 311 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 DEFB119Q8N690 84 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 NAT8LQ8N9F0 302 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 OR52K1Q8NGK4 314 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 FOXJ1Q92949 421 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 BIRC7Q96CA5 298 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 SNF8Q96H20 258 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 HSPA12BQ96MM6 686 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 EPC1Q9H2F5 836 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 HACD3Q9P035 362 aa17.02■□□□□ 0.32
COL7A1-202ENST00000422991 TPX2Q9ULW0 747 aaKnown RBP17.02■□□□□ 0.32
COL7A1-202ENST00000422991 BPTFQ12830 3046 aa17.02■□□□□ 0.31
COL7A1-202ENST00000422991 EFCAB8A8MWE9 144 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 PSMD11O00231 422 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 SEC31AO94979 1220 aaKnown RBP17.01■□□□□ 0.31
COL7A1-202ENST00000422991 LMNAP02545 664 aaKnown RBP17.01■□□□□ 0.31
COL7A1-202ENST00000422991 GM2AP17900 193 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 MAT2AP31153 395 aaKnown RBP17.01■□□□□ 0.31
COL7A1-202ENST00000422991 STC1P52823 247 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 ARHGEF7Q14155 803 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 FGL2Q14314 439 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 ELF2Q15723 593 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 DUPD1Q68J44 220 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 PCGF5Q86SE9 256 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 HOOK3Q86VS8 718 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 CBARPQ8N350 705 aaPredicted RBP17.01■□□□□ 0.31
COL7A1-202ENST00000422991 TTC30BQ8N4P2 665 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 LRRN4CLQ8ND94 238 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 BLOC1S5Q8TDH9 187 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 COQ10AQ96MF6 247 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 LRRC1Q9BTT6 524 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 C1QTNF2Q9BXJ5 285 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 TRIM31Q9BZY9 425 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 RAB17Q9H0T7 212 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 TRABDQ9H4I3 376 aa17.01■□□□□ 0.31
COL7A1-202ENST00000422991 PIH1D1Q9NWS0 290 aaKnown RBP17.01■□□□□ 0.31
COL7A1-202ENST00000422991 SHOC2Q9UQ13 582 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms