RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ARHGEF7Q14155 803 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 ACOX1Q15067 660 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 KIF26BQ2KJY2 2108 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 PARP15Q460N3 678 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 C14orf28Q4W4Y0 310 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 COLEC12Q5KU26 742 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 PPP1R15BQ5SWA1 713 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 CFAP58Q5T655 872 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 DENND2CQ68D51 928 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 DNAJC24Q6P3W2 148 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 RFLNAQ6ZTI6 216 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 DTX1Q86Y01 620 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 PTRH1Q86Y79 214 aaKnown RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 PHF13Q86YI8 300 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 ARHGAP12Q8IWW6 846 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 C3orf20Q8ND61 904 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 RNF31Q96EP0 1072 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 SMIM14Q96QK8 99 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 PEBP4Q96S96 227 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 KCTD15Q96SI1 283 aaPredicted RBP8.13□□□□□ -1.11
VIM-202ENST00000421459 AGPAT1Q99943 283 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 TRIM7Q9C029 511 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 TMEM9Q9P0T7 183 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 PCSK1NQ9UHG2 260 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 ACSL6Q9UKU0 697 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 SIK3Q9Y2K2 1263 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 DGKBQ9Y6T7 804 aa8.13□□□□□ -1.11
VIM-202ENST00000421459 DOCK4Q8N1I0 1966 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 MYO18BQ8IUG5 2567 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 TRBV23OR9-2A0A075B6M9 112 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 IGHV5-10-1A0A0J9YXX1 117 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 PRSS38A1L453 326 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 TMCO5BA8MYB1 307 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 TMX2-CTNND1H3BSU7 103 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 DFFAO00273 331 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 CACNB4O00305 520 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 TRAFD1O14545 582 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 ATMINO43313 823 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 ECEL1O95672 775 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 CALB1P05937 261 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 CEACAM5P06731 702 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 ELFN1P0C7U0 828 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 FGF3P11487 239 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 TNFAIP3P21580 790 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 EEF1GP26641 437 aaKnown RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 TRIM23P36406 574 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 GNPDA1P46926 289 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 SCNN1BP51168 640 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 SUOXP51687 545 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 GSCP56915 257 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 KIAA1024LP59773 190 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 TPI1P60174 286 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 BCL2L1Q07817 233 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 AGERQ15109 404 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 SYCP1Q15431 976 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 MAP9Q49MG5 647 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 CDKAL1Q5VV42 579 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 AFMIDQ63HM1 303 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 PNCKQ6P2M8 343 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 BRAT1Q6PJG6 821 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 TRIM72Q6ZMU5 477 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 NPWQ8N729 165 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 OR6C4Q8NGE1 309 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 HCAR2Q8TDS4 363 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 ECHDC3Q96DC8 303 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 PCMTD1Q96MG8 357 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 ZNF641Q96N77 438 aaPredicted RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 FUCA2Q9BTY2 467 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 DHX35Q9H5Z1 703 aaKnown RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 CATSPERBQ9H7T0 1116 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 CARS2Q9HA77 564 aaKnown RBP8.12□□□□□ -1.11
VIM-202ENST00000421459 FANCLQ9NW38 375 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 B4GALT6Q9UBX8 382 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 AP4E1Q9UPM8 1137 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 PCDHGC4Q9Y5F7 938 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 RP1P56715 2156 aa8.12□□□□□ -1.11
VIM-202ENST00000421459 HECTD1Q9ULT8 2610 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 RHPN2P1A8MT19 583 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 EEF2KO00418 725 aaKnown RBP8.11□□□□□ -1.11
VIM-202ENST00000421459 PPM1DO15297 605 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 DAPK3O43293 454 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 CCNB1P14635 433 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 ERCC2P18074 760 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 CD1CP29017 333 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 SERPINA4P29622 427 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 ETV3P41162 512 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 NDST2P52849 883 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 COPB1P53618 953 aaKnown RBP8.11□□□□□ -1.11
VIM-202ENST00000421459 SLC10A7Q0GE19 358 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 CNGA3Q16281 694 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 DCUN1D2Q6PH85 259 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 SLC30A9Q6PML9 568 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 CYP4V2Q6ZWL3 525 aaPredicted RBP8.11□□□□□ -1.11
VIM-202ENST00000421459 DPPA4Q7L190 304 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 HSD11B1LQ7Z5J1 315 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 PIM3Q86V86 326 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 HEATR4Q86WZ0 1026 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 ZNF761Q86XN6 746 aaPredicted RBP8.11□□□□□ -1.11
VIM-202ENST00000421459 MCOLN2Q8IZK6 566 aa8.11□□□□□ -1.11
VIM-202ENST00000421459 PGBD5Q8N414 524 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms