RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 LRRC32Q14392 662 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 SUZ12Q15022 739 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 KIF19Q2TAC6 998 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PLEKHG6Q3KR16 790 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 CCDC153Q494R4 210 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ZC3H12BQ5HYM0 836 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PRUNE1Q86TP1 453 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 BBS7Q8IWZ6 715 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 RGL4Q8IZJ4 473 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 RBFAQ8N0V3 343 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 SNX31Q8N9S9 440 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ARMC2Q8NEN0 867 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 MAGEC3Q8TD91 643 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 MCOLN3Q8TDD5 553 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 RPL10LQ96L21 214 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TNKS2Q9H2K2 1166 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 SYBUQ9NX95 663 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3DA0A087WVF3 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3IA0A087WXS9 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3EA0A087X179 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 A0A087X1B8 175 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3KA0A087X1G2 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3FA6NER0 549 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3LB9A6J9 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 CACNB4O00305 520 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PRAMEF11O60813 436 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3HP0C7X1 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ERVK-10P10266 1014 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PTGIRP43119 386 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PSMD8P48556 350 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ERVFC1P60507 584 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3GQ6DHY5 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3CQ6IPX1 549 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 UNC5AQ6ZN44 842 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 KIAA0408Q6ZU52 694 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PAQR9Q6ZVX9 377 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ADCK2Q7Z695 626 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 LRRC34Q8IZ02 419 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TBC1D3Q8IZP1 549 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ACMSDQ8TDX5 336 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 HDAC10Q969S8 669 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 FAR2Q96K12 515 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 CXCL16Q9H2A7 254 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PHPT1Q9NRX4 125 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 RHBDL2Q9NX52 303 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 NDRG2Q9UN36 371 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 A0A096LPK6 155 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 FAM95CA0A1B0GW59 222 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ADAM12O43184 909 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 DIAPH2O60879 1101 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 CATP04040 527 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 DLDP09622 509 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TMED10P49755 219 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 IL2P60568 153 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 RPL26P61254 145 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PITX1P78337 314 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 IFI35P80217 286 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 CSHL1Q14406 222 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 CNGA3Q16281 694 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 BRAT1Q6PJG6 821 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 TRAPPC5Q8IUR0 188 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 DDIASQ8IXT1 998 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PHACTR4Q8IZ21 702 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PQLC3Q8N755 202 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 BRSK1Q8TDC3 778 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 FAM111AQ96PZ2 611 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 SLC24A3Q9HC58 644 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 NMRK1Q9NWW6 199 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 DCTN4Q9UJW0 460 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 RPL26L1Q9UNX3 145 aaKnown RBP8.55□□□□□ -1.04
SYNE1-211ENST00000413186 PCDHGC4Q9Y5F7 938 aa8.55□□□□□ -1.04
SYNE1-211ENST00000413186 ZNF839A8K0R7 811 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 RAD51BO15315 384 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 RNASEH2AO75792 299 aaKnown RBP8.54□□□□□ -1.04
SYNE1-211ENST00000413186 PIRTP0C851 137 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 PBLDP30039 288 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-211ENST00000413186 SPAM1P38567 509 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 CRADDP78560 199 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 SLC7A9P82251 487 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 BMPR2Q13873 1038 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.54□□□□□ -1.04
SYNE1-211ENST00000413186 INO80DQ53TQ3 878 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-211ENST00000413186 EOGTQ5NDL2 527 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 TMTC4Q5T4D3 741 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 PIK3R6Q5UE93 754 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 DCAF12L1Q5VU92 463 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 CDC26Q8NHZ8 85 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 EBF3Q9H4W6 596 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 SUV39H2Q9H5I1 410 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 RAB23Q9ULC3 237 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 CD3EAPO15446 510 aaKnown RBP8.54□□□□□ -1.04
SYNE1-211ENST00000413186 MAGEC1O60732 1142 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 CNTN5O94779 1100 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 WASP42768 502 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 TRPC1P48995 793 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 CRYMQ14894 314 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 UBXN2BQ14CS0 331 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 OASLQ15646 514 aaKnown RBP8.54□□□□□ -1.04
SYNE1-211ENST00000413186 POM121L1PQ3SYA9 428 aa8.54□□□□□ -1.04
SYNE1-211ENST00000413186 SLC44A4Q53GD3 710 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms