RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FAM50BQ9Y247 325 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 LYVE1Q9Y5Y7 322 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SPARCP09486 303 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 PTPN3P26045 913 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 HYIQ5T013 277 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 DNAJB3Q8WWF6 145 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 UFD1Q92890 307 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 FAIM2Q9BWQ8 316 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 MOSPD1Q9UJG1 213 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 DNPEPQ9ULA0 475 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TAF6LQ9Y6J9 622 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ALDH9A1P49189 494 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 CLYBLQ8N0X4 340 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 CGRRF1Q99675 332 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 FARSAQ9Y285 508 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 RAB10P61026 200 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 DLG2Q15700 870 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 PIGWQ7Z7B1 504 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 METTL3Q86U44 580 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SPATA33Q96N06 139 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SLC4A9Q96Q91 983 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TBL1YQ9BQ87 522 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 QPCTLQ9NXS2 382 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 NR2E1Q9Y466 385 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TCEA3O75764 348 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 CYP1A2P05177 515 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 FAAP100Q0VG06 881 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SEPT12Q8IYM1 358 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 CERS2Q96G23 380 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF570Q96NI8 536 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 PUS3Q9BZE2 481 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 GDAP2Q9NXN4 497 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ANKDD1BA6NHY2 528 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TCP10L2B9ZVM9 353 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 MID1O15344 667 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ULK1O75385 1050 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 GPR1P46091 355 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 MTAPQ13126 283 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 UBAP2LQ14157 1087 aaKnown RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 CEP76Q8TAP6 659 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 TCTEX1D2Q8WW35 142 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ARL5BQ96KC2 179 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 SLC30A2Q9BRI3 323 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF214Q9UL59 606 aaPredicted RBP12.92□□□□□ -0.34
COL6A3-206ENST00000409809 PCDHGC3Q9UN70 934 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 MAU2Q9Y6X3 613 aa12.92□□□□□ -0.34
COL6A3-206ENST00000409809 KDM6BO15054 1643 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 E2F8A0AVK6 867 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 WDR27A2RRH5 827 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 F5H5T6 163 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SCGNO76038 276 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 MAPK8P45983 427 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 OVOS1Q6IE37 1185 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 OR2T12Q8NG77 320 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 C1GALT1C1Q96EU7 318 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 FNDC11Q9BVV2 318 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 EHD4Q9H223 541 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SLA2Q9H6Q3 261 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 VNN2O95498 520 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 EGFRP00533 1210 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 ARF4P18085 180 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 CES1P23141 567 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 RRM1P23921 792 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 IL32P24001 234 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SPIBQ01892 262 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 FBXO30Q8TB52 745 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF335Q9H4Z2 1342 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 STAU1O95793 577 aaKnown RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 TAF13Q15543 124 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 FAM20CQ8IXL6 584 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 GSTCDQ8NEC7 633 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 TBC1D16Q8TBP0 767 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 DYNLL2Q96FJ2 89 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 ORAI2Q96SN7 254 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 RUSC1Q9BVN2 902 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 PNMA8BQ9ULN7 279 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SPEF2Q9C093 1822 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 CD72P21854 359 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 AP2S1P53680 142 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 LSM3P62310 102 aaKnown RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 ZNF543Q08ER8 600 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 DPYSL3Q14195 570 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 RBM15BQ8NDT2 890 aaKnown RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 DNAJC18Q9H819 358 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 LOXHD1Q8IVV2 1947 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 C5orf60A6NFR6 353 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 CRKLP46109 303 aaKnown RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SCNN1BP51168 640 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 ARPP19P56211 112 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 CBFBQ13951 182 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SYT12Q8IV01 421 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 GLB1L3Q8NCI6 653 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 TMEM159Q96B96 161 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 BBS4Q96RK4 519 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 HPF1Q9NWY4 346 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 LMTK2Q8IWU2 1503 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 PAPSS1O43252 624 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-206ENST00000409809 HALP42357 657 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 SLC7A2P52569 658 aa12.91□□□□□ -0.34
COL6A3-206ENST00000409809 FAM124BQ9H5Z6 455 aaPredicted RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms