RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TNKS2Q9H2K2 1166 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 GPATCH2LQ9NWQ4 482 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 ASF1AQ9Y294 204 aa7.33□□□□□ -1.24
SCN9A-202ENST00000409435 TRIM64CA6NLI5 447 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 DUX1O43812 170 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CCDC166P0CW27 439 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ARL2P36404 184 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 FXR1P51114 621 aaKnown RBP eCLIP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LILRA4P59901 499 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 E2F1Q01094 437 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 MCL1Q07820 350 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 GPS1Q13098 491 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF268Q14587 947 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 MINDY4Q4G0A6 757 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LY6G5CQ5SRR4 150 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 MZT2BQ6NZ67 158 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 OR6K2Q8NGY2 324 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 IRGQQ8WZA9 623 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 EML4Q9HC35 981 aaKnown RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CYP4F12Q9HCS2 524 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 DNAJB4Q9UDY4 337 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 STXBP5LQ9Y2K9 1186 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ROBO3Q96MS0 1386 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ANO9A1A5B4 782 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ANKDD1BA6NHY2 528 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CYP7B1O75881 506 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 APOL3O95236 402 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LYPLA2O95372 231 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ALOX5P09917 674 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 HAPLN1P10915 354 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 TPH1P17752 444 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CXCR5P32302 372 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 NFATC2Q13469 925 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LRRC14Q15048 493 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 NCF4Q15080 339 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 TRADDQ15628 312 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 MAPK11Q15759 364 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SPANXN2Q5MJ10 180 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 HGSNATQ68CP4 663 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ABRAXAS1Q6UWZ7 409 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ATXN7L3BQ96GX2 97 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 FAM83CQ9BQN1 747 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CLSTN3Q9BQT9 956 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 THTPAQ9BU02 230 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SRMSQ9H3Y6 488 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 POLR1BQ9H9Y6 1135 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 KCNMB3Q9NPA1 279 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 EHD3Q9NZN3 535 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 PAK5Q9P286 719 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ATXN10Q9UBB4 475 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ALG6Q9Y672 507 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 TCP11X1B4DZS4 312 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LILRB3O75022 631 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 UQCRBP14927 111 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ALOX12P18054 663 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 NPR2P20594 1047 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 JAK1P23458 1154 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ALDH18A1P54886 795 aaKnown RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SPEM2Q0P670 501 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LONRF1Q17RB8 773 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 C5orf22Q49AR2 442 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SGO1Q5FBB7 561 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 RFWD3Q6PCD5 774 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 B3GNT6Q6ZMB0 384 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SLC39A11Q8N1S5 342 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 KAT2BQ92831 832 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 AP2M1Q96CW1 435 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 LMLNQ96KR4 655 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 PACSIN1Q9BY11 444 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ARRDC1-AS1Q9H2J1 176 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ASB8Q9H765 288 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 PLGRKTQ9HBL7 147 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 INTS10Q9NVR2 710 aaKnown RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CHURC1-FNTBB4DL54 471 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 H3BMM5 538 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 AGTP01019 485 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 NDUFS1P28331 727 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 STAT5AP42229 794 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 FNTBP49356 437 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ITGA1P56199 1179 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SF1Q15637 639 aaKnown RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CARD16Q5EG05 197 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ZNF57Q68EA5 555 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ASTLQ6HA08 431 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ACAD10Q6JQN1 1059 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 PAOXQ6QHF9 649 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 CHST15Q7LFX5 561 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 PRUNE1Q86TP1 453 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 TMEM161BQ8NDZ6 487 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 OR10Q1Q8NGQ4 319 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 FGF13Q92913 245 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 KLHL32Q96NJ5 620 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 ASB2Q96Q27 587 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SLC39A8Q9C0K1 460 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 RAB6BQ9NRW1 208 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 C19orf25Q9UFG5 118 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 TTC7AQ9ULT0 858 aaPredicted RBP7.32□□□□□ -1.24
SCN9A-202ENST00000409435 SCML1Q9UN30 329 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 BACE2Q9Y5Z0 518 aa7.32□□□□□ -1.24
SCN9A-202ENST00000409435 NRXN3Q9Y4C0 1643 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms