RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 NCKAP1Q9Y2A7 1128 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 TNFRSF10CO14798 259 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 PDHA1P08559 390 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 RXRGP48443 463 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 MTM1Q13496 603 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 GCNT7Q6ZNI0 430 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 USP45Q70EL2 814 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 MAATS1Q7Z4T9 603 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ZC3H18Q86VM9 953 aaKnown RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 LMNTD2Q8IXW0 634 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 MNS1Q8NEH6 495 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CCDC110Q8TBZ0 833 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 LINC00615Q96LM1 132 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 RBM15Q96T37 977 aaKnown RBP eCLIP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 MTG2Q9H4K7 406 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 SOX13Q9UN79 622 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF711Q9Y462 761 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 TMEM131Q92545 1883 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 FAM237BA0A1B0GVD1 139 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 KLHL33A6NCF5 533 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 NPIPB15A6NHN6 443 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 PRR5-ARHGAP8B1AHC4 643 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 VILLO15195 856 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 TMEM63AO94886 807 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ARCN1P48444 511 aaKnown RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 DR1Q01658 176 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CDH17Q12864 832 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ODF2Q5BJF6 829 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 WDR93Q6P2C0 686 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CAMK1DQ8IU85 385 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 TRAM1L1Q8N609 369 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 FLCNQ8NFG4 579 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CEP76Q8TAP6 659 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 HHIPQ96QV1 700 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 ZDHHC5Q9C0B5 715 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-202ENST00000394943 TEX264Q9Y6I9 313 aa7.03□□□□□ -1.28
LIMA1-202ENST00000394943 LRRC72A6NJI9 287 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RAD51CO43502 376 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DKK1O94907 266 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SEMA4FO95754 770 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 GAS8O95995 478 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RECQLP46063 649 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SPINT3P49223 89 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 GBX1Q14549 363 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 TYSND1Q2T9J0 566 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 ZC3H14Q6PJT7 736 aaKnown RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 MMAAQ8IVH4 418 aaKnown RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 MPP5Q8N3R9 675 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 STYXQ8WUJ0 223 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 BHMTQ93088 406 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 LRRC45Q96CN5 670 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SNF8Q96H20 258 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 IL22Q9GZX6 179 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 BTBD1Q9H0C5 482 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 FBXL12Q9NXK8 326 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 KLHL42Q9P2K6 505 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 FETUBQ9UGM5 382 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SPO11Q9Y5K1 396 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DNMT3AQ9Y6K1 912 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DGKBQ9Y6T7 804 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 PRAMEF26H0Y7S4 382 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 ADRA1DP25100 572 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 PSMD8P48556 350 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 FNTBP49356 437 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 BNC1Q01954 994 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 CSTF1Q05048 431 aaKnown RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DMPKQ09013 629 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 MYO9BQ13459 2157 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 ERAP2Q6P179 960 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 PID1Q7Z2X4 250 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 C17orf82Q86X59 251 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 NDUFAF2Q8N183 169 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 HDDC3Q8N4P3 179 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 MFSD2AQ8NA29 543 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 NETO2Q8NC67 525 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 CCNYQ8ND76 341 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SPATA22Q8NHS9 363 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 BAHD1Q8TBE0 780 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 C16orf45Q96MC5 204 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 NAT9Q9BTE0 207 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 AP1M1Q9BXS5 423 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 ZDHHC6Q9H6R6 413 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RMI1Q9H9A7 625 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 CD93Q9NPY3 652 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SMARCAL1Q9NZC9 954 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 VPS18Q9P253 973 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 KLHL8Q9P2G9 620 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RAB21Q9UL25 225 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 SLC17A4Q9Y2C5 497 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 TCAF1Q9Y4C2 921 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 MUC3AQ02505 3323 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 CHUKO15111 745 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 DFNA5O60443 496 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 KCNJ13O60928 360 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 RPP40O75818 363 aaKnown RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 USP1O94782 785 aa7.02□□□□□ -1.29
LIMA1-202ENST00000394943 MT-CYBP00156 380 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-202ENST00000394943 IVLP07476 585 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms