RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 KCNC1P48547 511 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 PDAP1Q13442 181 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 SEMA3AQ14563 771 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TRIM68Q6AZZ1 485 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CAMK1DQ8IU85 385 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 BRSK1Q8TDC3 778 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 SCG3Q8WXD2 468 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CDKN2AIPNLQ96HQ2 116 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TNKS2Q9H2K2 1166 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ARNT2Q9HBZ2 717 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TLR9Q9NR96 1032 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CATSPERZQ9NTU4 200 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 UTP6Q9NYH9 597 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 NCKIPSDQ9NZQ3 722 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ANKRD6Q9Y2G4 727 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 COL6A3P12111 3177 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 MYO16Q9Y6X6 1858 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 LOC285095A0A1B0GVY8 99 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CCL16O15467 120 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 RHOBTB1O94844 696 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TMCC1O94876 653 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 LRG1P02750 347 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 FGF1P05230 155 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ALPIP09923 528 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ITGB6P18564 788 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 HLA-DPA1P20036 260 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 WEE1P30291 646 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CSKP41240 450 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 DSG1Q02413 1049 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ZNF697Q5TEC3 545 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 STYXQ8WUJ0 223 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ABCG8Q9H221 673 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CERS4Q9HA82 394 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CFAP97Q9P2B7 532 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 MID2Q9UJV3 735 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 PLA2G4CQ9UP65 541 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 SH3BP1Q9Y3L3 701 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 NLRC5Q86WI3 1866 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TRIM43BA6NCK2 446 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 C2orf81A6NN90 581 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 STX7O15400 261 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 OR1I1O60431 355 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 KRT36O76013 467 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 SRP72O76094 671 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 SORBS2O94875 1100 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 LTA4HP09960 611 aaKnown RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CCND1P24385 295 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CDC25CP30307 473 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 MSX2P35548 267 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CYTH1Q15438 398 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 C1orf146Q5VVC0 180 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TMEM207Q6UWW9 146 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TMPRSS6Q8IU80 811 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 KIRREL3Q8IZU9 778 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TMEM151AQ8N4L1 468 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 RNF148Q8N7C7 305 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 MDGA1Q8NFP4 955 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 MYLIPQ8WY64 445 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 ESAMQ96AP7 390 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TRIM43Q96BQ3 446 aaPredicted RBP11.16□□□□□ -0.62
TCOF1-203ENST00000394269 PSKH2Q96QS6 385 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CCDC106Q9BWC9 280 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 FNIP2Q9P278 1114 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 FKBPLQ9UIM3 349 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 TBX21Q9UL17 535 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 CLEC4EQ9ULY5 219 aa11.16□□□□□ -0.62
TCOF1-203ENST00000394269 LRRC14BA6NHZ5 514 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 SLC7A4O43246 635 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 TGM5O43548 720 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 KDELR3O43731 214 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 FGF18O76093 207 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 SIX3O95343 332 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 APOA4P06727 396 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 EN2P19622 333 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 CHRM3P20309 590 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 MNX1P50219 401 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 COPAP53621 1224 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 WDR5P61964 334 aaKnown RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 PFKFB4Q16877 469 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 PPM1LQ5SGD2 360 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 CLEC6AQ6EIG7 209 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 HERC6Q8IVU3 1022 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 CCDC117Q8IWD4 279 aaPredicted RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 CNTN4Q8IWV2 1026 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 APCDD1Q8J025 514 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 MRPS31Q92665 395 aaKnown RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 TTC1Q99614 292 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 MRPL57Q9BQC6 102 aaKnown RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 GPR63Q9BZJ6 419 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 LNPEPQ9UIQ6 1025 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 IQCF5A8MTL0 148 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 CAPN14A8MX76 684 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 H3BNC9 293 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 CRTAMO95727 393 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 GFAPP14136 432 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 LEPRP48357 1165 aaKnown RBP11.15□□□□□ -0.62
TCOF1-203ENST00000394269 NME5P56597 212 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 ARF5P84085 180 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 KRT72Q14CN4 511 aa11.15□□□□□ -0.62
TCOF1-203ENST00000394269 RCN1Q15293 331 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms