RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 PPARGP37231 505 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CD97P48960 835 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 PGFP49763 221 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 GALK1P51570 392 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 PGGT1BP53609 377 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CCL23P55773 120 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 MAXP61244 160 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 LBRQ14739 615 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 FAM26DQ5JW98 314 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 AFMIDQ63HM1 303 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 APLFQ8IW19 511 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CEP97Q8IW35 865 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 SPATA6LQ8N4H0 392 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ATAD1Q8NBU5 361 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ZNF296Q8WUU4 475 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 PYDC1Q8WXC3 89 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 RPRD1AQ96P16 312 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CATSPER2Q96P56 530 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 KLHL5Q96PQ7 755 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 CEP44Q9C0F1 390 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TLR8Q9NR97 1041 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 TREX1Q9NSU2 369 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 MARCH2Q9P0N8 246 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 ZDHHC2Q9UIJ5 367 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 PRPF19Q9UMS4 504 aaKnown RBP9.69□□□□□ -0.86
COL6A3-204ENST00000392003 FIS1Q9Y3D6 152 aa9.69□□□□□ -0.86
COL6A3-204ENST00000392003 SLC12A8A0AV02 714 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TBKBP1A7MCY6 615 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 RAMP2O60895 175 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 LTA4HP09960 611 aaKnown RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 HTRA3P83110 453 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 PEX6Q13608 980 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 PSMD5Q16401 504 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TRIM71Q2Q1W2 868 aaKnown RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CNPY1Q3B7I2 92 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CLLU1OSQ5K130 101 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TCHHL1Q5QJ38 904 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 RAP1GAP2Q684P5 730 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CNSTQ6PJW8 725 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ADGRG6Q86SQ4 1221 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 DHDDSQ86SQ9 333 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 PLPP6Q8IY26 295 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 BBS5Q8N3I7 341 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 GPR152Q8TDT2 470 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 HEXDCQ8WVB3 486 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 IMP4Q96G21 291 aaKnown RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 VPS50Q96JG6 964 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CNDP1Q96KN2 507 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TMEM248Q9NWD8 314 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TMEM161AQ9NX61 479 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CLIC5Q9NZA1 410 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 PPM1HQ9ULR3 514 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 POMPQ9Y244 141 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 SYN3O14994 580 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CFLARO15519 480 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 GPC4O75487 556 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 COL6A1P12109 1028 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ETFBP38117 255 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CCR10P46092 362 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 VEGFBP49765 207 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 APLP1P51693 650 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 NKX3-2P78367 333 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ZNF235Q14590 738 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 POLD3Q15054 466 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TRIP4Q15650 581 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 MS4A13Q5J8X5 152 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 SH2D4BQ5SQS7 431 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 VARS2Q5ST30 1063 aaKnown RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 PGM2L1Q6PCE3 622 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 KDELC1Q6UW63 502 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 BNC2Q6ZN30 1099 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TRIM67Q6ZTA4 783 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 PTAR1Q7Z6K3 402 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 RTN4RL1Q86UN2 441 aaPredicted RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 HPS6Q86YV9 775 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TTC16Q8NEE8 873 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 SLC39A13Q96H72 371 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 B3GALT6Q96L58 329 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 EFCAB1Q9HAE3 211 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ARNT2Q9HBZ2 717 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ZMAT5Q9UDW3 170 aaKnown RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 SLC27A5Q9Y2P5 690 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 TMEM189-UBE2V1I3L0A0 370 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 J3KR12 359 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ARNTP27540 789 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 MAGEA11P43364 429 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 GPR15P49685 360 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 DSC2Q02487 901 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 SLC10A7Q0GE19 358 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ILF2Q12905 390 aaKnown RBP9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CEP70Q8NHQ1 597 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 MOCOSQ96EN8 888 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 RANBP9Q96S59 729 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 ECSITQ9BQ95 431 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 CYP4F12Q9HCS2 524 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 OSER1Q9NX31 292 aa9.68□□□□□ -0.86
COL6A3-204ENST00000392003 OR6C75A6NL08 312 aa9.67□□□□□ -0.86
COL6A3-204ENST00000392003 INPPL1O15357 1258 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms