RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 IQCF2Q8IXL9 164 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 ZNF483Q8TF39 744 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TRNT1Q96Q11 434 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 SAMD4AQ9UPU9 718 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 NRXN1Q9ULB1 1477 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 ELFN1P0C7U0 828 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 NR2F6P10588 404 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 C15orf59Q2T9L4 293 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PGBD2Q6P3X8 592 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 ULK3Q6PHR2 472 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PRR23CQ6ZRP0 262 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 SPATA19Q7Z5L4 167 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 SAPCD2Q86UD0 394 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 KBTBD2Q8IY47 623 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 LINGO1Q96FE5 620 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TRMT13Q9NUP7 481 aaKnown RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PCYOX1Q9UHG3 505 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 IFNA6P05013 189 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 SHMT1P34896 483 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PDX1P52945 283 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 NAGLUP54802 743 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 TBX2Q13207 712 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 MED22Q15528 200 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 GPER1Q99527 375 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 RNPEPL1Q9HAU8 725 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 CHST7Q9NS84 486 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 FKBP14Q9NWM8 211 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 BTRCQ9Y297 605 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM237BA0A1B0GVD1 139 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 ELF3P78545 371 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 PRKG2Q13237 762 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 ATP13A4Q4VNC1 1196 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 RFTN2Q52LD8 501 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 CHST15Q7LFX5 561 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 FIBCD1Q8N539 461 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 BHLHE41Q9C0J9 482 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 RAPGEFL1Q9UHV5 662 aa12.82□□□□□ -0.36
CCDC88C-204ENST00000389857 XKRYO14609 159 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 DNTTP04053 509 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 LINC00032P0C843 101 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SCNN1GP51170 649 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 AIF1P55008 147 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 PTPRNQ16849 979 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 FAM92BQ6ZTR7 304 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ZBTB45Q96K62 511 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 PLGRKTQ9HBL7 147 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 RAB21Q9UL25 225 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ABCA9Q8IUA7 1624 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 DHRS12A0PJE2 317 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 AGRPO00253 132 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 FGF1P05230 155 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 CYP3A4P08684 503 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 MNDAP41218 407 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SWI5Q1ZZU3 235 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 DHDDSQ86SQ9 333 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 PARGQ86W56 976 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 PHYKPLQ8IUZ5 450 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ELMO3Q96BJ8 720 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SEMA3CQ99985 751 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 RNF208Q9H0X6 261 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 MAGEL2Q9UJ55 1249 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SLIT1O75093 1534 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ARHGEF33A8MVX0 844 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ERAL1O75616 437 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 CDK9P50750 372 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 FKBP1AP62942 108 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 CRADDP78560 199 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ATG14Q6ZNE5 492 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 RTL4Q6ZR62 310 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 TIFAQ96CG3 184 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 TCF12Q99081 682 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 AGO1Q9UL18 857 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 RPTORQ8N122 1335 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ITPKBP27987 946 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 MCEMP1Q8IX19 187 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 MEIOBQ8N635 442 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 CDYL2Q8N8U2 506 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 RNF157Q96PX1 679 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 MNTQ99583 582 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 LRMDAQ9H2I8 198 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SLC25A14O95258 325 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SCRN3Q0VDG4 424 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 FNBP1LQ5T0N5 605 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 HELQQ8TDG4 1101 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 IPCEF1Q8WWN9 437 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 CLK4Q9HAZ1 481 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 KIAA1522Q9P206 1035 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 PRPF19Q9UMS4 504 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ASF1AQ9Y294 204 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 TECPR2O15040 1411 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SMIM10L2AP0DMW4 78 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 SMIM10L2BP0DMW5 78 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 TFPIP10646 304 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 HNF4AP41235 474 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 GABRB2P47870 512 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 USP50Q70EL3 339 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 ANKRD52Q8NB46 1076 aa12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 WBP11Q9Y2W2 641 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-204ENST00000389857 AZIN1O14977 448 aa12.8□□□□□ -0.36
CCDC88C-204ENST00000389857 SLC22A3O75751 556 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms