RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NFKBIAP25963 317 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 ARCN1P48444 511 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 ACVR1Q04771 509 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 TRAF2Q12933 501 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 ATXN7L2Q5T6C5 722 aaPredicted RBP18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 KYAT3Q6YP21 454 aaKnown RBP18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 GALNT7Q86SF2 657 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 ERP27Q96DN0 273 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 ZNF778Q96MU6 729 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 C7orf26Q96N11 449 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 KLF6Q99612 283 aaPredicted RBP18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 APOL5Q9BWW9 433 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 MFSD1Q9H3U5 465 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 RHOJQ9H4E5 214 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 UGT1A7Q9HAW7 530 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 UGT1A10Q9HAW8 530 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 UGT1A8Q9HAW9 530 aa18.26■□□□□ 0.51
CCDC88C-203ENST00000389856 CCDC78A2IDD5 438 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 K7ERQ8 282 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 TRAFD1O14545 582 aaPredicted RBP18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 PFDN6O15212 129 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 SMAD6O43541 496 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 DNAJC6O75061 913 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 RPP40O75818 363 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 WFS1O76024 890 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 PGLSO95336 258 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 ATP6V1G2O95670 118 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 POP4O95707 220 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 MPOP05164 745 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 ST8SIA6P61647 398 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 BMPR2Q13873 1038 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 ACCSLQ4AC99 568 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 CARD16Q5EG05 197 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 MRNIPQ6NTE8 343 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 OR6P1Q8NGX9 317 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 C19orf43Q9BQ61 176 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 CPEB1Q9BZB8 566 aaKnown RBP18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 PCDHB9Q9Y5E1 797 aa18.25■□□□□ 0.51
CCDC88C-203ENST00000389856 LINC01565O15544 149 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 FZD6O60353 706 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 LPOP22079 712 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 EIF4HQ15056 248 aaKnown RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 MYLK3Q32MK0 819 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 FAM91A1Q658Y4 838 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 ZNF470Q6ECI4 717 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 GRAMD4Q6IC98 578 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 SDCCAG8Q86SQ7 713 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 ADIPOR2Q86V24 386 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 MFSD6LQ8IWD5 586 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 C2CD4AQ8NCU7 369 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 ZNF641Q96N77 438 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 NECTIN4Q96NY8 510 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 AGAP2Q99490 1192 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 MAGEE1Q9HCI5 957 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 NLE1Q9NVX2 485 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 IL1RAPL1Q9NZN1 696 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 SIRPGQ9P1W8 387 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 DEC1Q9P2X7 70 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 SLC2A6Q9UGQ3 507 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 DCDC2Q9UHG0 476 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 EVLQ9UI08 416 aaPredicted RBP18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 GGT7Q9UJ14 662 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 ERVW-1Q9UQF0 538 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 PSAT1Q9Y617 370 aa18.24■□□□□ 0.51
CCDC88C-203ENST00000389856 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 HTRA2O43464 458 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 PRLP01236 227 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 TYK2P29597 1187 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 CD151P48509 253 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 E2F5Q15329 346 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 DLG2Q15700 870 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 INSCQ1MX18 579 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 ASTLQ6HA08 431 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 LCA5Q86VQ0 697 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 NAT16Q8N8M0 369 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 OR13J1Q8NGT2 312 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 ISL2Q96A47 359 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 RSPRY1Q96DX4 576 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 VPS39Q96JC1 886 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 RPL10LQ96L21 214 aaKnown RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 TSNARE1Q96NA8 513 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 LRRC3BQ96PB8 259 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 SIKE1Q9BRV8 207 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 TACO1Q9BSH4 297 aaKnown RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 NPHS2Q9NP85 383 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 LNPEPQ9UIQ6 1025 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 ZFP69BQ9UJL9 534 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 FBXO5Q9UKT4 447 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 VPS9D1Q9Y2B5 631 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 MYOFQ9NZM1 2061 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 A0A1W2PPC1 479 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 WDR91A4D1P6 747 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 GLRA3O75311 464 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 CTSOP43234 321 aaPredicted RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 ARFIP2P53365 341 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 POLR2LP62875 67 aaKnown RBP18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 FCHO2Q0JRZ9 810 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 DGKKQ5KSL6 1271 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 AFTPHQ6ULP2 937 aa18.23■□□□□ 0.51
CCDC88C-203ENST00000389856 NUDT18Q6ZVK8 323 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms