RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PDHBP11177 359 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PCNAP12004 261 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CYP3A5P20815 502 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CD6P30203 668 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RRM2P31350 389 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GPR15P49685 360 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PNLIPRP1P54315 467 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RPS23P62266 143 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 VLDLRP98155 873 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 MAD2L1Q13257 205 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 LRRC14Q15048 493 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KRT80Q6KB66 452 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KIAA1161Q6NSJ0 714 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TMPRSS6Q8IU80 811 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZCCHC7Q8N3Z6 543 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 ADCY4Q8NFM4 1077 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CCDC126Q96EE4 140 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 HSPA12BQ96MM6 686 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 HERPUD2Q9BSE4 406 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TRMOQ9BU70 441 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SLITRK2Q9H156 845 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GLOD4Q9HC38 313 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZNF355PQ9NSJ1 428 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PPARGC1AQ9UBK2 798 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 CPNE7Q9UBL6 633 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 BOKQ9UMX3 212 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 GUCA1BQ9UMX6 200 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TPRP12270 2363 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 ADGRB3O60242 1522 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KLRC4O43908 158 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 B4GALT4O60513 344 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 LRRN2O75325 713 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SERPINA3P01011 423 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 FECHP22830 423 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 FDFT1P37268 417 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GCLMP48507 274 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 NDST2P52849 883 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RASGEF1BQ0VAM2 473 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KEAP1Q14145 624 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PCSK7Q16549 785 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RFTN2Q52LD8 501 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 TRIM40Q6P9F5 258 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SLFN11Q7Z7L1 901 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 BPHLQ86WA6 291 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 SFR1Q86XK3 245 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 DENND1CQ8IV53 801 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CEP97Q8IW35 865 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 FTMTQ8N4E7 242 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PCDH19Q8TAB3 1148 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CA5BP1Q8WTZ4 195 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SARAFQ96BY9 339 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RMND5BQ96G75 393 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 BOD1Q96IK1 185 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 THTPAQ9BU02 230 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PCED1AQ9H1Q7 454 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RNPEPQ9H4A4 650 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TRABDQ9H4I3 376 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 FKRPQ9H9S5 495 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 QPCTLQ9NXS2 382 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ENOPH1Q9UHY7 261 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TRIM35Q9UPQ4 493 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SLC22A14Q9Y267 594 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PCDHGC5Q9Y5F6 944 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 PCDHGA10Q9Y5H3 936 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 KIF21AQ7Z4S6 1674 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ECEL1O95672 775 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 BAG2O95816 211 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GTF2H1P32780 548 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 BMP8BP34820 402 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SLC1A1P43005 524 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 YBEYP58557 167 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 ATP1A4Q13733 1029 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 RASGRP2Q7LDG7 609 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 DHX40Q8IX18 779 aaKnown RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZNF454Q8N9F8 522 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 TAS1R2Q8TE23 839 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 FNIP1Q8TF40 1166 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 SMPDL3BQ92485 455 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZFYVE19Q96K21 471 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 HSFY1Q96LI6 401 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 C12orf42Q96LP6 360 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 GNRHR2Q96P88 292 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ASB2Q96Q27 587 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ZNF559Q9BR84 538 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 NANSQ9NR45 359 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ARL8BQ9NVJ2 186 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 CORO1CQ9ULV4 474 aaPredicted RBP4.11□□□□□ -1.75
USH2A-202ENST00000366942 WASF2Q9Y6W5 498 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 LTBP4Q8N2S1 1624 aa4.11□□□□□ -1.75
USH2A-202ENST00000366942 ATRNL1Q5VV63 1379 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 A0A1B0GVM2 712 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 A0A1B0GW55 424 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 TCAF2A6NFQ2 919 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 H0Y858 1186 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DGKIO75912 1065 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DUX4L2P0CJ85 424 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DUX4L3P0CJ86 424 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DUX4L4P0CJ87 422 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DUX4L5P0CJ88 424 aa4.1□□□□□ -1.75
USH2A-202ENST00000366942 DUX4L6P0CJ89 424 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms