RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GRHL1Q9NZI5 618 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 WHRNQ9P202 907 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 ANAPC5Q9UJX4 755 aa22.22■■□□□ 1.15
SDC3-202ENST00000339394 C1orf232A0A0U1RR37 186 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 ESYT3A0FGR9 886 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 H0Y858 1186 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 AURKAO14965 403 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 MAP3K13O43283 966 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 HRO43593 1189 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 MMP20O60882 483 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 NDUFS2O75306 463 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 AVILO75366 819 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 CLDN7O95471 211 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 ELFN1P0C7U0 828 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 RPL6Q02878 288 aaKnown RBP22.21■■□□□ 1.15
SDC3-202ENST00000339394 PTSQ03393 145 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 CALCOCO2Q13137 446 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 MTM1Q13496 603 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 CNGA3Q16281 694 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 SEL1L3Q68CR1 1132 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 LIPIQ6XZB0 460 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 SLC36A4Q6YBV0 504 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 CAND1Q86VP6 1230 aaKnown RBP22.21■■□□□ 1.15
SDC3-202ENST00000339394 BBOF1Q8ND07 529 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 CXorf40AQ8TE69 158 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 SERPINB12Q96P63 405 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 SRPK1Q96SB4 655 aaKnown RBP22.21■■□□□ 1.15
SDC3-202ENST00000339394 ZFR2Q9UPR6 939 aaKnown RBP22.21■■□□□ 1.15
SDC3-202ENST00000339394 PCDHGA2Q9Y5H1 932 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 VPS13AQ96RL7 3174 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 A0A1W2PQU0 124 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 C10orf142B7Z368 130 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 RNGTTO60942 597 aaKnown RBP22.21■■□□□ 1.15
SDC3-202ENST00000339394 PPP2CBP62714 309 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 RPS21P63220 83 aaKnown RBP22.21■■□□□ 1.15
SDC3-202ENST00000339394 PPP2CAP67775 309 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 ARHGEF7Q14155 803 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 CERCAMQ5T4B2 595 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 LYSMD3Q7Z3D4 306 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 EID2BQ96D98 161 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 TRABDQ9H4I3 376 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 ZFYVE1Q9HBF4 777 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 EPB41L5Q9HCM4 733 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 HACD3Q9P035 362 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 ZNF711Q9Y462 761 aa22.21■■□□□ 1.15
SDC3-202ENST00000339394 IGLON5A6NGN9 336 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 BHMG1C9JSJ3 638 aaPredicted RBP22.2■■□□□ 1.14
SDC3-202ENST00000339394 SMAPO00193 183 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 AP3B1O00203 1094 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 RHOXF2BP0C7M4 288 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 MLNP12872 115 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 ZNF30P17039 623 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 CNR2P34972 360 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 SESN2P58004 480 aaPredicted RBP22.2■■□□□ 1.14
SDC3-202ENST00000339394 POU6F1Q14863 301 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 TMEM259Q4ZIN3 620 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 DENND2CQ68D51 928 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 KIAA1161Q6NSJ0 714 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 GLT6D1Q7Z4J2 308 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 HORMAD1Q86X24 394 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 CBARPQ8N350 705 aaPredicted RBP22.2■■□□□ 1.14
SDC3-202ENST00000339394 DEFB119Q8N690 84 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 BRSK1Q8TDC3 778 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 RHOXF2Q9BQY4 288 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 GPR63Q9BZJ6 419 aa22.2■■□□□ 1.14
SDC3-202ENST00000339394 XAB2Q9HCS7 855 aaKnown RBP22.2■■□□□ 1.14
SDC3-202ENST00000339394 ZNF318Q5VUA4 2279 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 ANKRD36A6QL64 1941 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 NDC80O14777 642 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 C6P13671 934 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 MAT2AP31153 395 aaKnown RBP22.19■■□□□ 1.14
SDC3-202ENST00000339394 TEX35Q5T0J7 233 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 TRIM69Q86WT6 500 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 CADM4Q8NFZ8 388 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 PRRX2Q99811 253 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 BFARQ9NZS9 450 aa22.19■■□□□ 1.14
SDC3-202ENST00000339394 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 GOLGA8CPA6NN73 597 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 SLC4A1P02730 911 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 HMGCLP35914 325 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 ZNF284Q2VY69 593 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 KIAA0895LQ68EN5 471 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 HSD11B1LQ7Z5J1 315 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 TMC3Q7Z5M5 1100 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 TMEFF1Q8IYR6 380 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 ART4Q93070 314 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 BIRC7Q96CA5 298 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.18■■□□□ 1.14
SDC3-202ENST00000339394 ZBTB32Q9Y2Y4 487 aaPredicted RBP22.18■■□□□ 1.14
SDC3-202ENST00000339394 COQ6Q9Y2Z9 468 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 ARL5AQ9Y689 179 aa22.18■■□□□ 1.14
SDC3-202ENST00000339394 PSMD11O00231 422 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 LATO43561 262 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 TM7SF2O76062 418 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 FSBPO95073 299 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 IGHV4-34P06331 123 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 C1SP09871 688 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 GM2AP17900 193 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 MAGEA3P43357 314 aa22.17■■□□□ 1.14
SDC3-202ENST00000339394 NPY2RP49146 381 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms